TRMT11 (tRNA methyltransferase 11 homolog) - Rat Genome Database

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Gene: TRMT11 (tRNA methyltransferase 11 homolog) Pan paniscus
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Symbol: TRMT11
Name: tRNA methyltransferase 11 homolog
RGD ID: 12046431
Description: ENCODES a protein that exhibits methyltransferase activity (inferred); nucleic acid binding (inferred); RNA methyltransferase activity (inferred); INVOLVED IN methylation (inferred); ASSOCIATED WITH Breast Neoplasms (ortholog); Colonic Neoplasms (ortholog); Esophageal Neoplasms (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tRNA (guanine(10)-N2)-methyltransferase homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25145,976,663 - 146,029,505 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16143,881,943 - 143,975,245 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06123,770,783 - 123,825,179 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16127,888,697 - 127,941,505 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6127,888,697 - 127,941,505 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
methylation  (IEA)

Cellular Component
cytoplasm  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TRMT11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25145,976,663 - 146,029,505 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16143,881,943 - 143,975,245 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06123,770,783 - 123,825,179 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16127,888,697 - 127,941,505 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6127,888,697 - 127,941,505 (+)Ensemblpanpan1.1panPan2
TRMT11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386125,986,540 - 126,272,343 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6125,986,479 - 126,203,817 (+)EnsemblGRCh38hg38GRCh38
GRCh376126,307,686 - 126,400,874 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366126,349,269 - 126,402,115 (+)NCBINCBI36Build 36hg18NCBI36
Build 346126,349,323 - 126,402,111NCBI
Celera6127,049,859 - 127,102,703 (+)NCBICelera
Cytogenetic Map6q22.32NCBI
HuRef6123,883,922 - 123,936,767 (+)NCBIHuRef
CHM1_16126,571,484 - 126,624,331 (+)NCBICHM1_1
T2T-CHM13v2.06127,175,155 - 127,468,301 (+)NCBIT2T-CHM13v2.0
Trmt11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391030,410,218 - 30,477,598 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1030,410,221 - 30,476,745 (-)EnsemblGRCm39 Ensembl
GRCm381030,534,225 - 30,602,149 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1030,534,225 - 30,600,749 (-)EnsemblGRCm38mm10GRCm38
MGSCv371030,254,031 - 30,320,555 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361030,223,641 - 30,290,108 (-)NCBIMGSCv36mm8
Celera1031,459,990 - 31,526,850 (-)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1017.07NCBI
Trmt11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8128,873,361 - 28,928,679 (+)NCBIGRCr8
mRatBN7.2127,054,437 - 27,109,765 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl127,054,420 - 27,201,610 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx126,805,590 - 26,860,866 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0132,805,396 - 32,860,678 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0127,006,171 - 27,061,450 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0129,432,109 - 29,576,079 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,432,152 - 29,487,473 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0130,871,680 - 31,014,648 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4127,737,888 - 27,793,207 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1127,740,832 - 27,796,148 (+)NCBI
Celera125,731,346 - 25,786,348 (+)NCBICelera
Cytogenetic Map1p11NCBI
Trmt11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554367,274,745 - 7,320,997 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554367,274,848 - 7,318,762 (+)NCBIChiLan1.0ChiLan1.0
TRMT11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1164,861,404 - 64,917,449 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl164,834,770 - 65,064,562 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha165,671,144 - 65,727,209 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0165,071,886 - 65,127,836 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl165,036,893 - 65,127,836 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1164,999,643 - 65,055,645 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0164,788,305 - 64,844,339 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0165,438,364 - 65,494,421 (+)NCBIUU_Cfam_GSD_1.0
Trmt11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946114,924,830 - 114,978,263 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366393,440,703 - 3,494,362 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366393,442,026 - 3,494,303 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRMT11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl136,940,334 - 37,002,056 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1136,930,857 - 37,002,079 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2140,704,053 - 40,774,748 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRMT11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11347,680,321 - 47,735,103 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1347,680,332 - 47,734,857 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604019,992,464 - 20,046,599 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000035614   ⟹   ENSPPAP00000012946
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6127,888,697 - 127,941,505 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000035621   ⟹   ENSPPAP00000012953
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6127,888,835 - 127,900,555 (+)Ensembl
RefSeq Acc Id: XM_003827616   ⟹   XP_003827664
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v25145,976,663 - 146,029,505 (+)NCBI
NHGRI_mPanPan16143,881,943 - 143,936,345 (+)NCBI
Mhudiblu_PPA_v06123,770,788 - 123,823,605 (+)NCBI
PanPan1.16127,888,697 - 127,941,505 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008952959   ⟹   XP_008951207
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v25145,976,893 - 146,029,505 (+)NCBI
NHGRI_mPanPan16143,882,172 - 143,936,345 (+)NCBI
Mhudiblu_PPA_v06123,770,783 - 123,823,605 (+)NCBI
PanPan1.16127,888,714 - 127,941,505 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003827664 (Get FASTA)   NCBI Sequence Viewer  
  XP_008951207 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000012946.1
  ENSPPAP00000012953.1
RefSeq Acc Id: XP_003827664   ⟸   XM_003827616
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ABD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008951207   ⟸   XM_008952959
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000012953   ⟸   ENSPPAT00000035621
RefSeq Acc Id: ENSPPAP00000012946   ⟸   ENSPPAT00000035614
Protein Domains
UPF0020


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029635 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000035614.1 UniProtKB/TrEMBL
  ENSPPAT00000035621.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
InterPro DNA_methylase_N6_adenine_CS UniProtKB/TrEMBL
  RNA_methylase_dom UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/TrEMBL
  tRNA_mtfrase_TRM11 UniProtKB/TrEMBL
KEGG Report pps:100987629 UniProtKB/TrEMBL
NCBI Gene TRMT11 ENTREZGENE
PANTHER RNA METHYLASE-RELATED UniProtKB/TrEMBL
  TRNA (GUANINE(10)-N2)-METHYLTRANSFERASE HOMOLOG UniProtKB/TrEMBL
Pfam UPF0020 UniProtKB/TrEMBL
PIRSF tRNA_mtfrase_TRM11 UniProtKB/TrEMBL
PRINTS N12N6MTFRASE UniProtKB/TrEMBL
PROSITE N6_MTASE UniProtKB/TrEMBL
  SAM_MT_TRM11 UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
UniProt A0A2R9A6N1_PANPA UniProtKB/TrEMBL
  A0A2R9ABD1 ENTREZGENE, UniProtKB/TrEMBL