WBP2NL (WBP2 N-terminal like) - Rat Genome Database

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Gene: WBP2NL (WBP2 N-terminal like) Pan paniscus
Analyze
Symbol: WBP2NL
Name: WBP2 N-terminal like
RGD ID: 12044558
Description: ENCODES a protein that exhibits chromatin DNA binding (inferred); transcription coactivator activity (inferred); INVOLVED IN regulation of cytosolic calcium ion concentration (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred); sperm flagellum (inferred); sperm head (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: postacrosomal sheath WW domain-binding protein-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,828,365 - 51,863,810 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12254,527,569 - 54,561,839 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,891,166 - 22,926,920 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12240,974,715 - 41,008,296 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2240,974,715 - 41,004,007 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
WBP2NL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,828,365 - 51,863,810 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12254,527,569 - 54,561,839 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,891,166 - 22,926,920 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12240,974,715 - 41,008,296 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2240,974,715 - 41,004,007 (+)Ensemblpanpan1.1panPan2
WBP2NL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,998,788 - 42,058,371 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,998,725 - 42,058,456 (+)EnsemblGRCh38hg38GRCh38
GRCh372242,394,792 - 42,424,479 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,724,738 - 40,754,425 (+)NCBINCBI36Build 36hg18NCBI36
Celera2226,200,953 - 26,230,676 (+)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2225,360,930 - 25,390,655 (+)NCBIHuRef
CHM1_12242,354,919 - 42,384,632 (+)NCBICHM1_1
T2T-CHM13v2.02242,478,395 - 42,537,955 (+)NCBIT2T-CHM13v2.0
Wbp2nl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391582,183,126 - 82,198,848 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1582,183,155 - 82,198,824 (+)EnsemblGRCm39 Ensembl
GRCm381582,298,925 - 82,314,647 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1582,298,954 - 82,314,623 (+)EnsemblGRCm38mm10GRCm38
MGSCv371582,129,414 - 82,144,988 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361582,126,719 - 82,142,107 (+)NCBIMGSCv36mm8
Celera1584,423,079 - 84,438,650 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.56NCBI
Wbp2nl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,694,910 - 115,710,912 (+)NCBIGRCr8
mRatBN7.27113,814,793 - 113,831,974 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,814,992 - 113,831,333 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.07123,531,657 - 123,548,574 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,531,682 - 123,548,081 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07123,516,366 - 123,533,289 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47120,674,629 - 120,689,938 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7110,129,903 - 110,146,820 (+)NCBICelera
Cytogenetic Map7q34NCBI
Wbp2nl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541327,402,545 - 27,436,906 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541327,402,614 - 27,442,106 (+)NCBIChiLan1.0ChiLan1.0
WBP2NL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,333,420 - 23,368,234 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,344,094 - 23,368,153 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1023,267,499 - 23,302,315 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01024,077,925 - 24,112,940 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,088,813 - 24,112,859 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11023,795,297 - 23,830,271 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,116,424 - 24,151,255 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,290,357 - 24,325,371 (-)NCBIUU_Cfam_GSD_1.0
LOC101960563
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049456,999,791 - 7,000,591 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493649210,208 - 13,477 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WBP2NL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11924,533,727 - 24,573,482 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1924,554,895 - 24,567,023 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045100,834,032 - 100,875,955 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wbp2nl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247526,711,843 - 6,736,018 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247526,689,501 - 6,736,053 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000054384   ⟹   ENSPPAP00000031519
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2240,974,715 - 41,004,007 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000054387   ⟹   ENSPPAP00000031522
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2240,974,803 - 41,002,713 (+)Ensembl
RefSeq Acc Id: XM_003814643   ⟹   XP_003814691
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22351,828,365 - 51,863,810 (+)NCBI
NHGRI_mPanPan12254,527,569 - 54,561,839 (+)NCBI
Mhudiblu_PPA_v02222,891,166 - 22,921,130 (+)NCBI
PanPan1.12240,974,715 - 41,004,007 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055105394   ⟹   XP_054961369
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22351,828,365 - 51,863,810 (+)NCBI
NHGRI_mPanPan12254,527,569 - 54,561,839 (+)NCBI
RefSeq Acc Id: XR_008622471
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22351,828,365 - 51,863,810 (+)NCBI
NHGRI_mPanPan12254,527,569 - 54,561,839 (+)NCBI
RefSeq Acc Id: XR_611101
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22351,828,365 - 51,863,810 (+)NCBI
NHGRI_mPanPan12254,527,569 - 54,561,839 (+)NCBI
Mhudiblu_PPA_v02222,891,166 - 22,926,920 (+)NCBI
PanPan1.12240,974,715 - 41,008,296 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003814691 (Get FASTA)   NCBI Sequence Viewer  
  XP_054961369 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000031519
  ENSPPAP00000031519.1
  ENSPPAP00000031522.1
RefSeq Acc Id: XP_003814691   ⟸   XM_003814643
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BQ22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000031519   ⟸   ENSPPAT00000054384
RefSeq Acc Id: ENSPPAP00000031522   ⟸   ENSPPAT00000054387
RefSeq Acc Id: XP_054961369   ⟸   XM_055105394
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BYD4 (UniProtKB/TrEMBL)
Protein Domains
GRAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038703 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000054384.1 UniProtKB/TrEMBL
  ENSPPAT00000054387.1 UniProtKB/TrEMBL
InterPro GRAM UniProtKB/TrEMBL
  WBP2-like UniProtKB/TrEMBL
KEGG Report pps:100991937 UniProtKB/TrEMBL
NCBI Gene WBP2NL ENTREZGENE
PANTHER PTHR31606 UniProtKB/TrEMBL
  PTHR31606:SF2 UniProtKB/TrEMBL
Pfam GRAM UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A2R9BQ22 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BYD4 ENTREZGENE, UniProtKB/TrEMBL