STH (saitohin) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: STH (saitohin) Pan paniscus
Analyze
Symbol: STH
Name: saitohin
RGD ID: 12043905
Description: INVOLVED IN positive regulation of mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH frontotemporal dementia (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21918,986,922 - 18,998,041 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11720,955,590 - 20,959,141 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01711,475,944 - 11,479,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11711,485,834 - 11,486,265 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
STH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21918,986,922 - 18,998,041 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11720,955,590 - 20,959,141 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01711,475,944 - 11,479,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11711,485,834 - 11,486,265 (-)NCBIpanpan1.1PanPan1.1panPan2
STH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381745,999,250 - 45,999,694 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1745,999,250 - 45,999,694 (+)EnsemblGRCh38hg38GRCh38
GRCh371744,076,616 - 44,077,060 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361741,432,483 - 41,432,869 (+)NCBINCBI36Build 36hg18NCBI36
Celera1740,723,927 - 40,724,371 (+)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1739,739,441 - 39,739,885 (+)NCBIHuRef
CHM1_11744,323,447 - 44,323,891 (+)NCBICHM1_1
T2T-CHM13v2.01746,860,878 - 46,861,322 (+)NCBIT2T-CHM13v2.0
STH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11659,915,844 - 59,920,081 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607730,638,046 - 30,642,258 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034941618   ⟹   XP_034797509
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21918,986,922 - 18,998,041 (+)NCBI
NHGRI_mPanPan11720,955,590 - 20,959,141 (+)NCBI
Mhudiblu_PPA_v01711,475,944 - 11,479,303 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034797509 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ACA96733 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034797509   ⟸   XM_034941618
- UniProtKB: A0A0U1TYY7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
NCBI Gene STH ENTREZGENE
UniProt A0A0U1TYY7 ENTREZGENE, UniProtKB/TrEMBL