CD244 (CD244 molecule) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CD244 (CD244 molecule) Pan paniscus
Analyze
Symbol: CD244
Name: CD244 molecule
RGD ID: 12040729
Description: ENCODES a protein that exhibits MHC class I protein binding (inferred); INVOLVED IN myeloid dendritic cell activation (ortholog); positive regulation of CD8-positive, alpha-beta T cell proliferation (ortholog); positive regulation of natural killer cell proliferation (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN external side of plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: natural killer cell receptor 2B4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2188,983,026 - 89,018,767 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1188,723,340 - 88,759,051 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01136,186,906 - 136,219,669 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11140,109,626 - 140,142,212 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,110,808 - 140,123,065 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CD244
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2188,983,026 - 89,018,767 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1188,723,340 - 88,759,051 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01136,186,906 - 136,219,669 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11140,109,626 - 140,142,212 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,110,808 - 140,123,065 (-)Ensemblpanpan1.1panPan2
CD244
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,830,160 - 160,862,887 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,830,160 - 160,862,887 (-)EnsemblGRCh38hg38GRCh38
GRCh371160,799,950 - 160,832,677 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,066,574 - 159,099,269 (-)NCBINCBI36Build 36hg18NCBI36
Build 341157,613,023 - 157,645,718NCBI
Celera1133,868,617 - 133,900,871 (-)NCBICelera
Cytogenetic Map1q23.3NCBI
HuRef1132,156,082 - 132,188,997 (-)NCBIHuRef
CHM1_11162,195,333 - 162,228,071 (-)NCBICHM1_1
T2T-CHM13v2.01159,967,199 - 159,999,910 (-)NCBIT2T-CHM13v2.0
Cd244a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,386,761 - 171,412,884 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,386,761 - 171,437,314 (+)EnsemblGRCm39 Ensembl
GRCm381171,558,718 - 171,585,316 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,559,193 - 171,609,746 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,489,324 - 173,515,447 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,395,874 - 173,420,233 (+)NCBIMGSCv36mm8
MGSCv361172,839,241 - 172,863,626 (+)NCBIMGSCv36mm8
Celera1174,415,055 - 174,442,954 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.52NCBI
Cd244l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81386,547,250 - 86,569,026 (+)NCBIGRCr8
mRatBN7.21384,018,887 - 84,036,612 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,020,095 - 84,036,100 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1386,525,877 - 86,541,884 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01387,924,115 - 87,939,720 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01385,124,263 - 85,139,746 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01389,959,091 - 89,995,993 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1389,975,267 - 89,995,974 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01394,596,434 - 94,618,284 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41387,513,413 - 87,531,211 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11387,702,296 - 87,720,095 (+)NCBI
Celera1383,694,456 - 83,704,305 (+)NCBICelera
Cytogenetic Map13q24NCBI
Cd244
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,534,064 - 12,559,434 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546812,532,937 - 12,559,859 (-)NCBIChiLan1.0ChiLan1.0
CD244
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,495,649 - 21,522,656 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,495,720 - 21,517,043 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3821,569,007 - 21,595,662 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03821,612,462 - 21,640,210 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3821,612,683 - 21,640,215 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13821,500,470 - 21,527,135 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03821,914,237 - 21,940,917 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03822,324,134 - 22,350,862 (+)NCBIUU_Cfam_GSD_1.0
Cd244
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,937,563 - 6,965,410 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936903146,108 - 162,410 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD244
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,668,239 - 89,700,972 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1489,668,221 - 89,700,974 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,546,648 - 97,579,398 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD244
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1203,103,226 - 3,138,322 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660382,143,657 - 2,178,756 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd244
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624794447,584 - 472,778 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624794447,572 - 472,700 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000047288   ⟹   ENSPPAP00000024463
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1140,110,808 - 140,123,065 (-)Ensembl
RefSeq Acc Id: XM_008964254   ⟹   XP_008962502
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2188,983,026 - 89,018,767 (+)NCBI
NHGRI_mPanPan1188,723,340 - 88,759,051 (+)NCBI
Mhudiblu_PPA_v01136,186,906 - 136,219,669 (-)NCBI
PanPan1.11140,109,626 - 140,142,212 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008962502 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000024463.1
RefSeq Acc Id: XP_008962502   ⟸   XM_008964254
- UniProtKB: A0A2R9B4F6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000024463   ⟸   ENSPPAT00000047288
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035376 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000047288.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  NK_rcpt_2B4_Ig_dom UniProtKB/TrEMBL
NCBI Gene CD244 ENTREZGENE
PANTHER PTHR12080:SF56 UniProtKB/TrEMBL
  SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE UniProtKB/TrEMBL
Pfam Ig_2 UniProtKB/TrEMBL
  Receptor_2B4 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A2R9B4F6 ENTREZGENE, UniProtKB/TrEMBL