SLC30A5 (solute carrier family 30 member 5) - Rat Genome Database

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Gene: SLC30A5 (solute carrier family 30 member 5) Pan paniscus
Analyze
Symbol: SLC30A5
Name: solute carrier family 30 member 5
RGD ID: 12039224
Description: ENCODES a protein that exhibits cadmium ion transmembrane transporter activity (ortholog); zinc efflux transmembrane transporter activity (ortholog); zinc:proton antiporter activity (ortholog); INVOLVED IN cobalt ion transport (ortholog); GPI anchor biosynthetic process (ortholog); response to zinc ion (ortholog); ASSOCIATED WITH Bradycardia (ortholog); genetic disease (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN apical plasma membrane (ortholog); endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proton-coupled zinc antiporter SLC30A5; zinc transporter 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2444,792,872 - 44,832,846 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1542,917,254 - 42,986,476 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0544,873,631 - 44,909,875 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1546,440,860 - 46,477,050 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl546,440,860 - 46,477,050 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC30A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2444,792,872 - 44,832,846 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1542,917,254 - 42,986,476 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0544,873,631 - 44,909,875 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1546,440,860 - 46,477,050 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl546,440,860 - 46,477,050 (-)Ensemblpanpan1.1panPan2
SLC30A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38569,094,014 - 69,131,069 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl569,093,991 - 69,131,069 (+)EnsemblGRCh38hg38GRCh38
GRCh37568,389,841 - 68,426,896 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36568,425,574 - 68,461,636 (+)NCBINCBI36Build 36hg18NCBI36
Build 34568,425,573 - 68,436,321NCBI
Celera565,389,051 - 65,425,100 (+)NCBICelera
Cytogenetic Map5q13.1-q13.2NCBI
HuRef565,345,354 - 65,382,350 (+)NCBIHuRef
CHM1_1568,389,460 - 68,426,612 (+)NCBICHM1_1
T2T-CHM13v2.0569,916,495 - 69,953,585 (+)NCBIT2T-CHM13v2.0
Slc30a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913100,939,153 - 100,969,988 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13100,939,156 - 100,969,935 (-)EnsemblGRCm39 Ensembl
GRCm3813100,802,645 - 100,833,480 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13100,802,648 - 100,833,427 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713101,572,603 - 101,603,382 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613101,902,905 - 101,933,684 (-)NCBIMGSCv36mm8
Celera13104,411,487 - 104,442,263 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1353.23NCBI
Slc30a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8233,679,800 - 33,710,025 (-)NCBIGRCr8
mRatBN7.2231,945,745 - 31,975,969 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl231,945,729 - 31,975,934 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx239,079,619 - 39,109,821 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0237,121,962 - 37,152,434 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0231,979,126 - 32,009,278 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0230,815,683 - 30,845,796 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl230,815,703 - 30,846,149 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0249,974,659 - 50,004,756 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4231,607,557 - 31,637,655 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1231,527,921 - 31,558,095 (-)NCBI
Celera227,956,817 - 27,986,885 (-)NCBICelera
Cytogenetic Map2q12NCBI
Slc30a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955446156,541 - 196,275 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955446158,843 - 196,275 (-)NCBIChiLan1.0ChiLan1.0
SLC30A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1254,205,510 - 54,242,451 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl254,205,483 - 54,241,895 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha251,172,683 - 51,210,706 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0254,716,157 - 54,754,620 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl254,716,228 - 54,754,538 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1251,775,907 - 51,813,957 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0252,550,485 - 52,588,884 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0253,438,066 - 53,476,413 (+)NCBIUU_Cfam_GSD_1.0
Slc30a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213191,482,103 - 191,517,787 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936480417,205 - 454,277 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936480418,621 - 454,303 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC30A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1647,284,760 - 47,322,347 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11647,284,974 - 47,320,892 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21651,183,110 - 51,219,031 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC30A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1465,190,394 - 65,227,480 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl465,190,499 - 65,229,027 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604913,918,524 - 13,955,897 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc30a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624815134,723 - 172,230 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624815134,290 - 172,177 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000044214   ⟹   ENSPPAP00000021412
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl546,440,860 - 46,477,050 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000044219   ⟹   ENSPPAP00000021417
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl546,442,315 - 46,473,719 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000044220   ⟹   ENSPPAP00000021418
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl546,442,315 - 46,468,041 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000044224   ⟹   ENSPPAP00000021422
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl546,467,073 - 46,476,743 (-)Ensembl
RefSeq Acc Id: XM_003806792   ⟹   XP_003806840
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2444,792,872 - 44,829,406 (-)NCBI
NHGRI_mPanPan1542,917,254 - 42,983,034 (-)NCBI
Mhudiblu_PPA_v0544,873,631 - 44,909,860 (-)NCBI
PanPan1.1546,440,860 - 46,477,050 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008957459   ⟹   XP_008955707
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2444,818,042 - 44,829,506 (-)NCBI
NHGRI_mPanPan1542,971,692 - 42,984,568 (-)NCBI
Mhudiblu_PPA_v0544,898,795 - 44,909,870 (-)NCBI
PanPan1.1546,466,380 - 46,477,050 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024928904   ⟹   XP_024784672
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2444,792,872 - 44,829,416 (-)NCBI
NHGRI_mPanPan1542,946,496 - 42,983,054 (-)NCBI
Mhudiblu_PPA_v0544,873,631 - 44,909,862 (-)NCBI
PanPan1.1546,441,667 - 46,477,050 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034960007   ⟹   XP_034815898
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2444,792,872 - 44,829,408 (-)NCBI
NHGRI_mPanPan1542,917,254 - 42,983,038 (-)NCBI
Mhudiblu_PPA_v0544,873,631 - 44,909,861 (-)NCBI
RefSeq Acc Id: XM_034960008   ⟹   XP_034815899
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2444,818,042 - 44,832,846 (-)NCBI
NHGRI_mPanPan1542,971,692 - 42,986,476 (-)NCBI
Mhudiblu_PPA_v0544,898,819 - 44,909,875 (-)NCBI
RefSeq Acc Id: XM_055112332   ⟹   XP_054968307
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2444,792,872 - 44,829,406 (-)NCBI
NHGRI_mPanPan1542,917,254 - 42,983,033 (-)NCBI
RefSeq Acc Id: XM_055112333   ⟹   XP_054968308
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2444,792,872 - 44,829,408 (-)NCBI
NHGRI_mPanPan1542,917,254 - 42,983,039 (-)NCBI
RefSeq Acc Id: XM_063604209   ⟹   XP_063460279
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2444,792,872 - 44,829,419 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003806840   ⟸   XM_003806792
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AVT4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008955707   ⟸   XM_008957459
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_024784672   ⟸   XM_024928904
- Peptide Label: isoform X3
- UniProtKB: A0A2R9AVT4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034815898   ⟸   XM_034960007
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AVT4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034815899   ⟸   XM_034960008
- Peptide Label: isoform X8
- UniProtKB: A0A2R9AVU4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000021412   ⟸   ENSPPAT00000044214
RefSeq Acc Id: ENSPPAP00000021417   ⟸   ENSPPAT00000044219
RefSeq Acc Id: ENSPPAP00000021418   ⟸   ENSPPAT00000044220
RefSeq Acc Id: ENSPPAP00000021422   ⟸   ENSPPAT00000044224
RefSeq Acc Id: XP_054968308   ⟸   XM_055112333
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054968307   ⟸   XM_055112332
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063460279   ⟸   XM_063604209
- Peptide Label: isoform X5


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033882 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000044214.1 UniProtKB/TrEMBL
  ENSPPAT00000044219.1 UniProtKB/TrEMBL
  ENSPPAT00000044220.1 UniProtKB/TrEMBL
  ENSPPAT00000044224.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1510.10 UniProtKB/TrEMBL
InterPro Cation_efflux UniProtKB/TrEMBL
  Cation_efflux_TMD_sf UniProtKB/TrEMBL
  Msc2-like UniProtKB/TrEMBL
KEGG Report pps:100993040 UniProtKB/TrEMBL
NCBI Gene SLC30A5 ENTREZGENE
PANTHER PTHR45755 UniProtKB/TrEMBL
  ZINC TRANSPORTER 5 UniProtKB/TrEMBL
Pfam Cation_efflux UniProtKB/TrEMBL
Superfamily-SCOP SSF161111 UniProtKB/TrEMBL
UniProt A0A2R9AVT4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AVT9_PANPA UniProtKB/TrEMBL
  A0A2R9AVU4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AW38_PANPA UniProtKB/TrEMBL