TNFSF14 (TNF superfamily member 14) - Rat Genome Database

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Gene: TNFSF14 (TNF superfamily member 14) Pan paniscus
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Symbol: TNFSF14
Name: TNF superfamily member 14
RGD ID: 12038786
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of myoblast differentiation (ortholog); positive regulation of myoblast fusion (ortholog); positive regulation of T cell chemotaxis (ortholog); ASSOCIATED WITH IgA glomerulonephritis (ortholog); mucolipidosis type IV (ortholog); multiple sclerosis (ortholog); FOUND IN extracellular space (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor ligand superfamily member 14; tumor necrosis factor superfamily member 14
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22011,074,535 - 11,081,518 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11910,299,977 - 10,306,862 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,691,648 - 5,700,935 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1196,614,372 - 6,621,763 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl196,614,378 - 6,621,763 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TNFSF14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22011,074,535 - 11,081,518 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11910,299,977 - 10,306,862 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,691,648 - 5,700,935 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1196,614,372 - 6,621,763 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl196,614,378 - 6,621,763 (-)Ensemblpanpan1.1panPan2
TNFSF14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38196,661,253 - 6,670,588 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl196,661,253 - 6,670,588 (-)EnsemblGRCh38hg38GRCh38
GRCh37196,661,264 - 6,670,599 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36196,615,560 - 6,621,599 (-)NCBINCBI36Build 36hg18NCBI36
Build 34196,615,565 - 6,621,599NCBI
Celera196,604,701 - 6,612,155 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef196,425,122 - 6,432,649 (-)NCBIHuRef
CHM1_1196,663,409 - 6,670,848 (-)NCBICHM1_1
T2T-CHM13v2.0196,650,888 - 6,660,217 (-)NCBIT2T-CHM13v2.0
Tnfsf14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,496,437 - 57,501,182 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,496,492 - 57,501,177 (-)EnsemblGRCm39 Ensembl
GRCm381757,189,474 - 57,194,181 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1757,189,492 - 57,194,177 (-)EnsemblGRCm38mm10GRCm38
MGSCv371757,328,915 - 57,333,612 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,874,827 - 56,889,591 (-)NCBIMGSCv36mm8
Celera1761,538,038 - 61,542,735 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.71NCBI
Tnfsf14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr892,155,270 - 2,160,100 (-)NCBIGRCr8
mRatBN7.292,068,295 - 2,073,128 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl92,069,104 - 2,073,216 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,497,352 - 2,501,003 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,846,726 - 7,850,377 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,802,581 - 6,806,232 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.099,761,363 - 9,765,461 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl99,761,536 - 9,765,186 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.098,768,631 - 8,772,649 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,447,405 - 6,451,055 (+)NCBICelera
Cytogenetic Map9q11NCBI
Tnfsf14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,829,402 - 2,835,335 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554952,829,314 - 2,834,826 (+)NCBIChiLan1.0ChiLan1.0
TNFSF14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12053,604,101 - 53,607,522 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2053,603,709 - 53,607,522 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,351,781 - 53,355,064 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,258,226 - 54,261,513 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,258,091 - 54,261,536 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,325,114 - 53,328,394 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,773,591 - 53,776,865 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,002,586 - 54,005,871 (+)NCBIUU_Cfam_GSD_1.0
Tnfsf14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,854,848 - 213,859,307 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,976,492 - 3,979,825 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,976,492 - 3,979,825 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFSF14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl272,473,477 - 72,483,989 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1272,478,178 - 72,483,885 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2272,993,336 - 72,998,023 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNFSF14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.166,235,641 - 6,241,706 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl66,236,193 - 6,241,311 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660811,755,097 - 1,764,021 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfsf14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248283,763,849 - 3,770,500 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Sequence


Ensembl Acc Id: ENSPPAT00000051262   ⟹   ENSPPAP00000028415
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl196,614,378 - 6,621,763 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000051266   ⟹   ENSPPAP00000028419
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl196,616,107 - 6,621,240 (-)Ensembl
RefSeq Acc Id: XM_003819350   ⟹   XP_003819398
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22011,074,535 - 11,081,518 (-)NCBI
NHGRI_mPanPan11910,299,977 - 10,306,862 (-)NCBI
Mhudiblu_PPA_v0195,691,648 - 5,700,935 (-)NCBI
PanPan1.1196,614,372 - 6,621,763 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055103175   ⟹   XP_054959150
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22011,074,535 - 11,081,518 (-)NCBI
NHGRI_mPanPan11910,299,977 - 10,306,862 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003819398 (Get FASTA)   NCBI Sequence Viewer  
  XP_054959150 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000028415
  ENSPPAP00000028415.1
  ENSPPAP00000028419.1
RefSeq Acc Id: XP_003819398   ⟸   XM_003819350
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BFJ8 (UniProtKB/TrEMBL),   A0A2R9BFJ1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000028415   ⟸   ENSPPAT00000051262
Ensembl Acc Id: ENSPPAP00000028419   ⟸   ENSPPAT00000051266
RefSeq Acc Id: XP_054959150   ⟸   XM_055103175
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BFJ1 (UniProtKB/TrEMBL)
Protein Domains
THD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037246 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051262.1 UniProtKB/TrEMBL
  ENSPPAT00000051266.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro TNF_dom UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/TrEMBL
KEGG Report pps:100995075 UniProtKB/TrEMBL
NCBI Gene TNFSF14 ENTREZGENE
PANTHER TUMOR NECROSIS FACTOR FAMILY MEMBER UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 14 UniProtKB/TrEMBL
Pfam TNF UniProtKB/TrEMBL
PROSITE TNF_2 UniProtKB/TrEMBL
SMART TNF UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/TrEMBL
UniProt A0A2R9BFJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BFJ8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-08 TNFSF14  TNF superfamily member 14    tumor necrosis factor superfamily member 14  Symbol and/or name change 5135510 APPROVED