LOC100984164 (olfactory receptor 1S1)

Gene: LOC100984164 (olfactory receptor 1S1) Pan paniscus

Analyze

Symbol:

LOC100984164 (Ensembl: OR1S1)

Name:

olfactory receptor 1S1 (Ensembl:olfactory receptor family 1 subfamily S member 1)

RGD ID:

12037401

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

RGD Orthologs

Human

Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	59,362,468 - 59,365,829 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	60,388,624 - 60,391,985 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	53,455,120 - 53,456,097 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	56,918,137 - 56,919,114 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	56,918,137 - 56,919,114 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

signal transduction (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC100984164
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	59,362,468 - 59,365,829 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	60,388,624 - 60,391,985 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	53,455,120 - 53,456,097 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	56,918,137 - 56,919,114 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	56,918,137 - 56,919,114 (+)	Ensembl	panpan1.1		panPan2

OR1S1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	58,212,720 - 58,216,084 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	58,212,720 - 58,216,084 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	57,980,192 - 57,983,556 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	57,738,793 - 57,739,770 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	57,738,792 - 57,739,770	NCBI
Celera	11	55,340,640 - 55,341,617 (+)	NCBI		Celera
Cytogenetic Map	11	q12.1	NCBI
HuRef	11	54,330,021 - 54,330,998 (+)	NCBI		HuRef
CHM1_1	11	57,848,245 - 57,849,222 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	58,162,136 - 58,165,500 (+)	NCBI		T2T-CHM13v2.0

Or1s2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	220,338,536 - 220,339,483 (+)	NCBI		GRCr8
mRatBN7.2	1	210,913,992 - 210,914,939 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	210,911,289 - 210,915,657 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	219,288,451 - 219,289,398 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	226,179,721 - 226,180,668 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	219,042,931 - 219,043,878 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	230,628,996 - 230,629,943 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	230,628,996 - 230,629,943 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	237,766,958 - 237,767,905 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	216,877,700 - 216,878,647 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	217,038,895 - 217,039,843 (+)	NCBI
Celera	1	208,312,616 - 208,313,563 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003826385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000028920 ⟹ ENSPPAP00000006991

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	56,918,137 - 56,919,114 (+)	Ensembl

RefSeq Acc Id:

XM_003826385 ⟹ XP_003826433

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	59,362,468 - 59,365,829 (+)	NCBI
NHGRI_mPanPan1	11	60,388,624 - 60,391,985 (+)	NCBI
Mhudiblu_PPA_v0	11	53,455,120 - 53,456,097 (+)	NCBI
PanPan1.1	11	56,918,137 - 56,919,114 (+)	NCBI

Sequence:

show sequence

ATGAAGACTTTTGGTTCCTTTCTTCAGATCGGCAGAAATATGCATCAAGGAAACCAAACCACCA
TCACTGAATTCATTCTCCTGGGATTTTTCAAGCAGGATGAGCATCAAAACCTCCTCTTTGTGCT
TTTCTTGGGTATGTACCTGGTCACTGTGATTGGGAATGGGCTCATCATTCTGGCTATCAGCTTG
GATACGTACCTTCATACCCCCATGTATCTCTTCCTTGCCAATCTATCCTTTGCTGATATTTCCT
CCATTTCCAACTCAGTCCCCAAAATGCTGGTGAATATTCAAACCAAGAGTCAATCCATCTCTTA
TGAGAGCTGCATCACACAGATGTACTTTTCTATTGTGTTTGTCGTCATTGACAATTTGCTTTTG
GGGACCATGGCCTATGACCGCTTTGTGGCGATCTGCCACCCTCTGAACTATACAACTCTCATGC
GGCCCAGGTTCGGCATTTTGCTCACAGTCATCTCATGGTTCCTCAGTAATATTATTGCTCTGAC
ACACACCCTTCTGCTCATTCAATTGCTCTTCTGTAACCACAACACTCTCCCACACTTCTTCTGT
GACTTGGCCCCTCTGCTCAAACTGTCCTGTTCAGATACATTGATCAATGAGCTTGTGTTGTTTA
TTGTGGGTTTATCAGTTATCATCTTCCCCTTTACATTCATCTTCTTTTCCTATGTCTGCATCAT
CAGAGCTGTCCTGAGAGTATCTTCCACACAGGGAAAGTGGAAAGCCTTCTCCACTTGTGGCTCT
CACCTGACAATTGCATTACTGTTCTACGGAACCATTGTAGGCGTGTACTTTTTCCCCTCCTCCA
CTCACCCTGAGGACACTGATAAGATTGGTGCTGTCCTATTCACTGTGGTGACACCCATGATGAA
CCCCTTCATCTACAGCTTGAGGAATAAGGATATGAAAGGTGCCCTGAGAAAGCTCATCAATAGA
AAAATTTCTTCCCTTTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003826433	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000006991
	ENSPPAP00000006991.1

RefSeq Acc Id:

XP_003826433 ⟸ XM_003826385

- UniProtKB:

A0A2R8ZPX4 (UniProtKB/TrEMBL), A0A2R8ZTY9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKTFGSFLQIGRNMHQGNQTTITEFILLGFFKQDEHQNLLFVLFLGMYLVTVIGNGLIILAISL
DTYLHTPMYLFLANLSFADISSISNSVPKMLVNIQTKSQSISYESCITQMYFSIVFVVIDNLLL
GTMAYDRFVAICHPLNYTTLMRPRFGILLTVISWFLSNIIALTHTLLLIQLLFCNHNTLPHFFC
DLAPLLKLSCSDTLINELVLFIVGLSVIIFPFTFIFFSYVCIIRAVLRVSSTQGKWKAFSTCGS
HLTIALLFYGTIVGVYFFPSSTHPEDTDKIGAVLFTVVTPMMNPFIYSLRNKDMKGALRKLINR
KISSL

hide sequence

RefSeq Acc Id:

ENSPPAP00000006991 ⟸ ENSPPAT00000028920

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000026039	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000028920.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
KEGG Report	pps:100984164	UniProtKB/TrEMBL
NCBI Gene	LOC100984164	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 1S1-RELATED	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A2R8ZPX4	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZTY9	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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