PRRG3 (proline rich and Gla domain 3) - Rat Genome Database

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Gene: PRRG3 (proline rich and Gla domain 3) Pan paniscus
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Symbol: PRRG3
Name: proline rich and Gla domain 3
RGD ID: 12037084
Description: ENCODES a protein that exhibits calcium ion binding (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transmembrane gamma-carboxyglutamic acid protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X151,762,920 - 151,773,849 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X151,766,525 - 151,777,454 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X141,274,802 - 141,286,081 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X151,233,013 - 151,238,962 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX151,232,966 - 151,238,962 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PRRG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X151,762,920 - 151,773,849 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X151,766,525 - 151,777,454 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X141,274,802 - 141,286,081 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X151,233,013 - 151,238,962 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX151,232,966 - 151,238,962 (+)Ensemblpanpan1.1panPan2
PRRG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X151,694,607 - 151,705,924 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX151,694,607 - 151,705,924 (+)EnsemblGRCh38hg38GRCh38
GRCh37X150,863,079 - 150,874,396 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X150,617,435 - 150,620,669 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X150,537,346 - 150,540,581NCBI
CeleraX151,115,147 - 151,118,431 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX139,720,484 - 139,726,675 (+)NCBIHuRef
CHM1_1X150,738,686 - 150,745,019 (+)NCBICHM1_1
T2T-CHM13v2.0X149,962,930 - 149,974,244 (+)NCBIT2T-CHM13v2.0
Prrg3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X71,005,769 - 71,016,328 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX71,006,230 - 71,016,328 (+)EnsemblGRCm39 Ensembl
GRCm38X71,962,164 - 71,972,722 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX71,962,624 - 71,972,722 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X69,208,360 - 69,218,067 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X68,215,741 - 68,225,448 (+)NCBIMGSCv36mm8
CeleraX62,941,143 - 62,950,854 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.15NCBI
Prrg3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X154,711,246 - 154,731,359 (+)NCBIGRCr8
mRatBN7.2X149,666,498 - 149,689,353 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX149,670,257 - 149,677,373 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01669,954,910 - 69,966,733 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl169,285,579 - 69,287,538 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1669,959,803 - 69,965,224 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01669,624,916 - 69,635,722 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X157,599,863 - 157,604,493NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic MapXq37NCBI
Prrg3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554987,217,544 - 7,227,699 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554987,217,550 - 7,227,685 (+)NCBIChiLan1.0ChiLan1.0
PRRG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X119,649,964 - 119,661,042 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX119,651,112 - 119,656,019 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX105,033,125 - 105,044,138 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X121,870,925 - 121,881,939 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX121,871,376 - 121,881,936 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X118,590,936 - 118,601,945 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X121,074,136 - 121,085,140 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X120,956,728 - 120,967,746 (+)NCBIUU_Cfam_GSD_1.0
Prrg3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X117,200,134 - 117,210,897 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367141,050,454 - 1,052,593 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367141,045,541 - 1,055,548 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRRG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX123,085,490 - 123,095,584 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X123,085,511 - 123,095,589 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X140,727,194 - 140,732,073 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103232749
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X126,247,468 - 126,257,469 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX126,247,955 - 126,259,518 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606564,015,574 - 64,041,793 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prrg3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248833,012,279 - 3,022,095 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248833,011,450 - 3,022,096 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000060428   ⟹   ENSPPAP00000037528
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX151,232,966 - 151,238,962 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000060431   ⟹   ENSPPAP00000037531
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX151,237,220 - 151,238,405 (+)Ensembl
RefSeq Acc Id: XM_008960676   ⟹   XP_008958924
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X151,763,382 - 151,773,849 (+)NCBI
NHGRI_mPanPan1X151,766,988 - 151,777,454 (+)NCBI
Mhudiblu_PPA_v0X141,275,613 - 141,286,081 (+)NCBI
PanPan1.1X151,233,013 - 151,238,962 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034949757   ⟹   XP_034805648
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X151,762,920 - 151,773,849 (+)NCBI
NHGRI_mPanPan1X151,766,525 - 151,777,454 (+)NCBI
Mhudiblu_PPA_v0X141,275,152 - 141,286,081 (+)NCBI
RefSeq Acc Id: XM_034949759   ⟹   XP_034805650
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X151,766,792 - 151,773,849 (+)NCBI
NHGRI_mPanPan1X151,770,395 - 151,777,448 (+)NCBI
Mhudiblu_PPA_v0X141,279,019 - 141,286,081 (+)NCBI
RefSeq Acc Id: XM_063601870   ⟹   XP_063457940
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X151,763,393 - 151,773,849 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008958924 (Get FASTA)   NCBI Sequence Viewer  
  XP_034805648 (Get FASTA)   NCBI Sequence Viewer  
  XP_034805650 (Get FASTA)   NCBI Sequence Viewer  
  XP_063457940 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000037528
  ENSPPAP00000037528.1
  ENSPPAP00000037531.1
RefSeq Acc Id: XP_008958924   ⟸   XM_008960676
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C9A8 (UniProtKB/TrEMBL),   A0A2R9C6J1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034805648   ⟸   XM_034949757
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C9A8 (UniProtKB/TrEMBL),   A0A2R9C6J1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034805650   ⟸   XM_034949759
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000037528   ⟸   ENSPPAT00000060428
RefSeq Acc Id: ENSPPAP00000037531   ⟸   ENSPPAT00000060431
RefSeq Acc Id: XP_063457940   ⟸   XM_063601870
- Peptide Label: isoform X1
Protein Domains
Gla


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041513 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060428.1 UniProtKB/TrEMBL
  ENSPPAT00000060431.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.740.10 UniProtKB/TrEMBL
InterPro Coagulation_fac-like_Gla_dom UniProtKB/TrEMBL
  GLA-like_dom_SF UniProtKB/TrEMBL
  GLA_domain UniProtKB/TrEMBL
KEGG Report pps:100974238 UniProtKB/TrEMBL
NCBI Gene PRRG3 ENTREZGENE
PANTHER COAGULATION FACTOR UniProtKB/TrEMBL
  TRANSMEMBRANE GAMMA-CARBOXYGLUTAMIC ACID PROTEIN 3 UniProtKB/TrEMBL
Pfam Gla UniProtKB/TrEMBL
PRINTS GLABLOOD UniProtKB/TrEMBL
PROSITE GLA_1 UniProtKB/TrEMBL
  GLA_2 UniProtKB/TrEMBL
SMART GLA UniProtKB/TrEMBL
Superfamily-SCOP SSF57630 UniProtKB/TrEMBL
UniProt A0A2R9C6J1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C9A8 ENTREZGENE, UniProtKB/TrEMBL