ABCA6 (ATP binding cassette subfamily A member 6) - Rat Genome Database

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Gene: ABCA6 (ATP binding cassette subfamily A member 6) Pan paniscus
Analyze
Symbol: ABCA6
Name: ATP binding cassette subfamily A member 6
RGD ID: 12036969
Description: ENCODES a protein that exhibits ABC-type transporter activity (inferred); ATP binding (inferred); ATP hydrolysis activity (inferred); INVOLVED IN transmembrane transport (inferred); ASSOCIATED WITH allergic contact dermatitis (ortholog); Colorectal Neoplasms (ortholog); genetic disease (ortholog); FOUND IN Golgi membrane (inferred); intracellular membrane-bounded organelle (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family A member 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21985,081,270 - 85,171,106 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11789,915,074 - 89,982,612 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01763,006,916 - 63,069,941 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11768,396,083 - 68,458,795 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1768,396,083 - 68,458,795 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ABCA6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21985,081,270 - 85,171,106 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11789,915,074 - 89,982,612 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01763,006,916 - 63,069,941 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11768,396,083 - 68,458,795 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1768,396,083 - 68,458,795 (-)Ensemblpanpan1.1panPan2
ABCA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381769,078,702 - 69,141,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1769,078,702 - 69,141,895 (-)EnsemblGRCh38hg38GRCh38
GRCh371767,074,843 - 67,138,036 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361764,586,442 - 64,649,610 (-)NCBINCBI36Build 36hg18NCBI36
Build 341764,586,441 - 64,649,610NCBI
Celera1763,646,675 - 63,709,544 (-)NCBICelera
Cytogenetic Map17q24.2-q24.3NCBI
HuRef1762,460,603 - 62,523,371 (-)NCBIHuRef
CHM1_11767,139,673 - 67,202,552 (-)NCBICHM1_1
T2T-CHM13v2.01769,955,592 - 70,018,487 (-)NCBIT2T-CHM13v2.0
Abca6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911110,065,464 - 110,142,811 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11110,067,646 - 110,142,602 (-)EnsemblGRCm39 Ensembl
GRCm3811110,174,638 - 110,251,776 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11110,176,820 - 110,251,776 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711110,038,134 - 110,113,090 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611109,992,910 - 110,067,818 (-)NCBIMGSCv36mm8
Celera11121,913,016 - 121,989,859 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1173.37NCBI
Abca6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81095,642,026 - 95,711,535 (-)NCBIGRCr8
mRatBN7.21095,142,805 - 95,212,087 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1095,142,966 - 95,211,530 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01098,477,716 - 98,546,699 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1098,478,067 - 98,544,447 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01098,184,908 - 98,253,813 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41099,626,334 - 99,693,870 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11099,646,914 - 99,727,703 (-)NCBI
Celera1093,792,868 - 93,862,869 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Abca6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554783,639,781 - 3,707,449 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554783,639,817 - 3,706,115 (+)NCBIChiLan1.0ChiLan1.0
ABCA6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1915,587,837 - 15,648,639 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl915,420,835 - 15,783,045 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha916,479,377 - 16,594,503 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0917,248,747 - 17,363,720 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl917,248,778 - 17,309,979 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1916,193,140 - 16,308,051 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0911,225,688 - 11,340,377 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0911,225,320 - 11,339,865 (+)NCBIUU_Cfam_GSD_1.0
LOC101961636
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560210,857,232 - 10,911,494 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365418,283,081 - 8,337,398 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365418,283,081 - 8,337,398 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCA6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1211,225,384 - 11,286,095 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11211,225,068 - 11,369,161 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21211,721,875 - 11,850,381 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABCA6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11652,450,398 - 52,511,256 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1652,451,146 - 52,511,107 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607723,352,612 - 23,413,343 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000040170   ⟹   ENSPPAP00000017466
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1768,396,083 - 68,458,795 (-)Ensembl
RefSeq Acc Id: XM_055101723   ⟹   XP_054957698
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21985,098,635 - 85,171,081 (-)NCBI
NHGRI_mPanPan11789,915,074 - 89,982,612 (-)NCBI
RefSeq Acc Id: XM_063599361   ⟹   XP_063455431
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21985,098,635 - 85,171,106 (-)NCBI
RefSeq Acc Id: XM_063599362   ⟹   XP_063455432
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21985,081,270 - 85,171,081 (-)NCBI
RefSeq Acc Id: XM_063599363   ⟹   XP_063455433
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21985,098,635 - 85,155,808 (-)NCBI
RefSeq Acc Id: XM_063599364   ⟹   XP_063455434
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21985,098,635 - 85,155,808 (-)NCBI
Protein Sequences
Protein RefSeqs XP_054957698 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455431 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455432 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455433 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455434 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000017466.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000017466   ⟸   ENSPPAT00000040170
RefSeq Acc Id: XP_054957698   ⟸   XM_055101723
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063455432   ⟸   XM_063599362
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063455431   ⟸   XM_063599361
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063455434   ⟸   XM_063599364
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063455433   ⟸   XM_063599363
- Peptide Label: isoform X2
Protein Domains
ABC transporter


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031827 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000040170.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC2_TM UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABCA UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report pps:100971404 UniProtKB/TrEMBL
NCBI Gene ABCA6 ENTREZGENE
PANTHER PTHR19229 UniProtKB/TrEMBL
  PTHR19229:SF13 UniProtKB/TrEMBL
Pfam ABC2_membrane_3 UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A2R9AJC0_PANPA UniProtKB/TrEMBL