C1QA (complement C1q A chain) - Rat Genome Database

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Gene: C1QA (complement C1q A chain) Pan paniscus
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Symbol: C1QA
Name: complement C1q A chain
RGD ID: 12036408
Description: INVOLVED IN complement activation, classical pathway (ortholog); synapse pruning (ortholog); ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); C1q Deficiency (ortholog); C1q Deficiency 1 (ortholog); FOUND IN complement component C1q complex (ortholog); extracellular region (ortholog); extrinsic component of postsynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C1QC; complement C1q C chain; complement C1q subcomponent subunit A; complement C1q subcomponent subunit C; complement component 1, q subcomponent, A chain
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21204,307,981 - 204,311,074 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11203,410,999 - 203,414,092 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0121,821,927 - 21,825,020 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1122,770,557 - 22,773,682 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
C1QA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21204,307,981 - 204,311,074 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11203,410,999 - 203,414,092 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0121,821,927 - 21,825,020 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1122,770,557 - 22,773,682 (+)NCBIpanpan1.1PanPan1.1panPan2
C1QA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38122,636,463 - 22,639,678 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl122,635,077 - 22,639,678 (+)EnsemblGRCh38hg38GRCh38
GRCh37122,962,956 - 22,966,171 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36122,835,705 - 22,838,762 (+)NCBINCBI36Build 36hg18NCBI36
Build 34122,709,405 - 22,711,405NCBI
Celera121,287,826 - 21,290,883 (+)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef121,207,463 - 21,210,520 (+)NCBIHuRef
CHM1_1123,075,637 - 23,078,694 (+)NCBICHM1_1
T2T-CHM13v2.0122,461,488 - 22,464,703 (+)NCBIT2T-CHM13v2.0
C1qc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394136,617,115 - 136,620,225 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4136,617,115 - 136,620,376 (-)EnsemblGRCm39 Ensembl
GRCm384136,889,801 - 136,892,936 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4136,889,804 - 136,893,065 (-)EnsemblGRCm38mm10GRCm38
MGSCv374136,445,717 - 136,448,829 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364136,161,886 - 136,164,949 (-)NCBIMGSCv36mm8
Celera4135,097,110 - 135,100,232 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map469.05NCBI
C1qc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85154,410,845 - 154,414,208 (-)NCBIGRCr8
mRatBN7.25149,127,412 - 149,130,757 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5149,127,415 - 149,131,017 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5151,825,173 - 151,828,528 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05153,599,460 - 153,602,815 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05153,581,457 - 153,584,813 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05155,255,013 - 155,258,631 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5155,255,005 - 155,258,392 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05159,017,512 - 159,021,130 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45155,656,104 - 155,659,430 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15155,666,143 - 155,669,469 (-)NCBI
Celera5147,525,168 - 147,528,479 (-)NCBICelera
Cytogenetic Map5q36NCBI
C1qc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554522,758,821 - 2,762,522 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554522,759,079 - 2,762,522 (+)NCBIChiLan1.0ChiLan1.0
C1QC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,660,039 - 76,664,602 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,660,035 - 76,664,577 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha273,164,924 - 73,169,492 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0277,219,290 - 77,223,860 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl277,219,286 - 77,223,830 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1274,040,178 - 74,044,743 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,048,597 - 75,053,163 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0276,052,212 - 76,056,780 (-)NCBIUU_Cfam_GSD_1.0
LOC101960229
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505842,188,570 - 42,192,175 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364748,013,359 - 8,016,959 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364748,013,395 - 8,016,937 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1QA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl680,586,280 - 80,589,204 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1680,586,259 - 80,589,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2674,610,025 - 74,612,855 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C1QA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120110,024,847 - 110,027,868 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660336,286,037 - 6,289,144 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
C1qa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247647,363,567 - 7,366,617 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247647,363,615 - 7,366,408 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_024929669   ⟹   XP_024785437
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21204,307,981 - 204,311,004 (-)NCBI
NHGRI_mPanPan11203,410,999 - 203,414,021 (-)NCBI
Mhudiblu_PPA_v0121,821,986 - 21,825,020 (+)NCBI
PanPan1.1122,770,582 - 22,773,682 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024929670   ⟹   XP_024785438
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21204,307,981 - 204,310,962 (-)NCBI
NHGRI_mPanPan11203,410,999 - 203,413,978 (-)NCBI
Mhudiblu_PPA_v0121,822,047 - 21,825,020 (+)NCBI
PanPan1.1122,770,582 - 22,773,682 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024929671   ⟹   XP_024785439
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21204,307,981 - 204,311,074 (-)NCBI
NHGRI_mPanPan11203,410,999 - 203,414,092 (-)NCBI
Mhudiblu_PPA_v0121,821,927 - 21,825,020 (+)NCBI
PanPan1.1122,770,557 - 22,773,682 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_024785437 (Get FASTA)   NCBI Sequence Viewer  
  XP_024785438 (Get FASTA)   NCBI Sequence Viewer  
  XP_024785439 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_024785439   ⟸   XM_024929671
- Sequence:
RefSeq Acc Id: XP_024785438   ⟸   XM_024929670
- Sequence:
RefSeq Acc Id: XP_024785437   ⟸   XM_024929669
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene C1QC ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 C1QA  complement C1q A chain  C1QC  complement C1q C chain  Symbol and/or name change 5135510 APPROVED