IFNK (interferon kappa) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: IFNK (interferon kappa) Pan paniscus
Analyze
Symbol: IFNK
Name: interferon kappa
RGD ID: 12036052
Description: ENCODES a protein that exhibits type I interferon receptor binding (ortholog); INVOLVED IN cytokine-mediated signaling pathway (ortholog); regulation of DNA-templated transcription (ortholog); response to virus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21197,017,807 - 97,020,111 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1997,022,473 - 97,026,049 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0927,371,315 - 27,374,899 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1927,978,446 - 27,979,069 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IFNK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21197,017,807 - 97,020,111 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1997,022,473 - 97,026,049 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0927,371,315 - 27,374,899 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1927,978,446 - 27,979,069 (+)NCBIpanpan1.1PanPan1.1panPan2
IFNK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38927,524,290 - 27,526,498 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl927,524,290 - 27,526,498 (+)EnsemblGRCh38hg38GRCh38
GRCh37927,524,288 - 27,526,496 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36927,514,312 - 27,516,496 (+)NCBINCBI36Build 36hg18NCBI36
Build 34927,514,311 - 27,516,494NCBI
Celera927,452,433 - 27,454,617 (+)NCBICelera
Cytogenetic Map9p21.2NCBI
HuRef927,477,101 - 27,479,285 (+)NCBIHuRef
CHM1_1927,524,102 - 27,526,286 (+)NCBICHM1_1
T2T-CHM13v2.0927,534,854 - 27,537,062 (+)NCBIT2T-CHM13v2.0
Ifnk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39435,152,055 - 35,154,019 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl435,152,056 - 35,154,005 (+)EnsemblGRCm39 Ensembl
GRCm38435,152,055 - 35,154,019 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl435,152,056 - 35,154,005 (+)EnsemblGRCm38mm10GRCm38
MGSCv37435,099,304 - 35,101,268 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36435,340,942 - 35,342,906 (+)NCBIMGSCv36mm8
Celera434,868,163 - 34,870,126 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map417.08NCBI
Ifnk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8554,528,304 - 54,530,511 (+)NCBIGRCr8
mRatBN7.2549,732,073 - 49,734,281 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl549,732,073 - 49,734,281 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx551,925,283 - 51,927,487 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0553,525,545 - 53,527,749 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0553,427,390 - 53,429,596 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0550,631,217 - 50,634,142 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl550,631,217 - 50,634,142 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0555,196,055 - 55,196,631 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4551,803,329 - 51,803,905 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1551,730,233 - 51,804,083 (+)NCBI
Celera548,475,708 - 48,478,169 (+)NCBICelera
Cytogenetic Map5q21NCBI
Ifnk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554727,359,453 - 7,360,055 (-)NCBIChiLan1.0ChiLan1.0
IFNK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11145,641,627 - 45,642,256 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1145,641,627 - 45,642,256 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1144,318,040 - 44,318,669 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01146,568,952 - 46,589,945 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1146,587,784 - 46,588,413 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11145,243,232 - 45,243,861 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01145,140,168 - 45,140,797 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01145,880,605 - 45,881,234 (+)NCBIUU_Cfam_GSD_1.0
Ifnk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947160,536,991 - 160,537,590 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366112,129,751 - 2,131,640 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFNK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1038,444,720 - 38,445,346 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11038,444,720 - 38,445,346 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21043,586,681 - 43,587,307 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008956113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_008956113   ⟹   XP_008954361
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21197,017,807 - 97,020,111 (-)NCBI
NHGRI_mPanPan1997,022,473 - 97,026,049 (-)NCBI
Mhudiblu_PPA_v0927,371,315 - 27,374,899 (+)NCBI
PanPan1.1927,978,446 - 27,979,069 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008954361 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_008954361   ⟸   XM_008956113
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene IFNK ENTREZGENE