TSPAN5 (tetraspanin 5) - Rat Genome Database

Name: TSPAN5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: TSPAN5 (tetraspanin 5) Pan paniscus

Analyze

Symbol:

TSPAN5

Name:

tetraspanin 5

RGD ID:

12035582

Description:

ENCODES a protein that exhibits enzyme binding (inferred); INVOLVED IN positive regulation of Notch signaling pathway (inferred); protein localization to plasma membrane (inferred); protein maturation (inferred); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN actin cytoskeleton (inferred); membrane (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tetraspanin-5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TSPAN5 (tetraspanin 5)	NCBI	Ortholog
Mus musculus (house mouse):	Tspan5 (tetraspanin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tspan5 (tetraspanin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tspan5 (tetraspanin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TSPAN5 (tetraspanin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tspan5 (tetraspanin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TSPAN5 (tetraspanin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TSPAN5 (tetraspanin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tspan5 (tetraspanin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	96,537,654 - 96,718,544 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	96,815,612 - 96,994,454 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	90,872,988 - 91,052,345 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	101,536,950 - 101,717,526 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	101,536,950 - 101,717,228 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of Notch signaling pathway (IEA)

protein localization to plasma membrane (IEA)

protein maturation (IEA)

regulation of membrane protein ectodomain proteolysis (IEA)

Cellular Component

actin cytoskeleton (IEA)

membrane (IEA)

nucleoplasm (IEA)

plasma membrane (IEA)

Molecular Function

enzyme binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

TSPAN5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	96,537,654 - 96,718,544 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	96,815,612 - 96,994,454 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	90,872,988 - 91,052,345 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	101,536,950 - 101,717,526 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	101,536,950 - 101,717,228 (-)	Ensembl	panpan1.1		panPan2

TSPAN5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	98,470,367 - 98,658,611 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	98,470,367 - 98,658,611 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	99,391,518 - 99,579,762 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	99,612,421 - 99,798,750 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	96,686,187 - 96,874,635 (-)	NCBI		Celera
Cytogenetic Map	4	q23	NCBI
HuRef	4	95,128,912 - 95,317,094 (-)	NCBI		HuRef
CHM1_1	4	99,368,380 - 99,556,673 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	101,785,330 - 101,973,565 (-)	NCBI		T2T-CHM13v2.0

Tspan5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	138,447,609 - 138,610,194 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	138,447,956 - 138,613,666 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	138,741,848 - 138,904,433 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	138,742,195 - 138,907,905 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	138,405,159 - 138,567,388 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	138,679,582 - 138,841,811 (+)	NCBI		MGSCv36	mm8
Celera	3	145,169,944 - 145,332,005 (+)	NCBI		Celera
Cytogenetic Map	3	H1	NCBI
cM Map	3	64.42	NCBI

Tspan5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	229,967,521 - 230,139,012 (+)	NCBI		GRCr8
mRatBN7.2	2	227,294,180 - 227,469,361 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	227,294,217 - 227,465,664 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	235,044,298 - 235,207,548 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	232,944,059 - 233,107,310 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	227,808,665 - 227,971,910 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	244,058,186 - 244,224,059 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	244,058,186 - 244,224,058 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	262,587,481 - 262,753,105 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	236,314,737 - 236,487,072 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	236,436,906 - 236,471,800 (+)	NCBI
Celera	2	219,449,291 - 219,612,375 (+)	NCBI		Celera
Cytogenetic Map	2	q44	NCBI

Tspan5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	8,725,761 - 8,759,785 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	8,725,761 - 8,759,784 (-)	NCBI	ChiLan1.0	ChiLan1.0

TSPAN5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	20,707,449 - 20,878,441 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	20,709,539 - 20,878,426 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	21,053,555 - 21,228,770 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	20,890,676 - 21,061,654 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	20,890,676 - 21,061,716 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	20,859,415 - 21,029,584 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	20,685,159 - 20,855,851 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	19,041,028 - 19,211,757 (+)	NCBI		UU_Cfam_GSD_1.0

Tspan5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	20,832,188 - 20,999,948 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936717	49,752 - 217,654 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936717	49,797 - 217,567 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TSPAN5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	121,657,325 - 121,843,242 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	121,657,320 - 121,843,296 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	130,843,562 - 131,031,806 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TSPAN5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	46,610,841 - 46,788,761 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	46,609,602 - 46,788,704 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	25,042,011 - 25,220,101 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tspan5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624757	26,557,898 - 26,733,209 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624757	26,558,052 - 26,732,932 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003829918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008955318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055111650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000065531 ⟹ ENSPPAP00000042601

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	4	101,536,950 - 101,574,158 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000065534 ⟹ ENSPPAP00000042604

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	4	101,539,096 - 101,717,228 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000065536 ⟹ ENSPPAP00000042606

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	4	101,539,096 - 101,577,449 (-)	Ensembl

RefSeq Acc Id:

XM_003829918 ⟹ XP_003829966

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	96,537,654 - 96,718,544 (-)	NCBI
NHGRI_mPanPan1	4	96,815,612 - 96,994,451 (-)	NCBI
Mhudiblu_PPA_v0	4	90,872,988 - 91,052,345 (-)	NCBI
PanPan1.1	4	101,536,950 - 101,717,526 (-)	NCBI

Sequence:

show sequence

CGCGCGCGAACGGGCGGGCGAGCAAGCGAGCGGCGTATCCACCAGCATCTGCCGCGGCCGCCTT
TGCCCGAAGCCCGGGGACGAACCGACGGACAGACCGCCTGGCGCACGGACGCGGGCGCTCGCTT
TGTGTTCGGGGCTAGCGTCGGCGAGGCTTGGGCTTGCAGCGCGCGGCTTCCCTGCTTTCTCGCG
GCCACCCCGGCTCCGGCGGCCTCGGCGCGCGAGGGGCTGGAGGTGCGGGAGCCGCTCTCCGCCG
GTCGGTCCCCGCGCGGCTGAGCCCAGGCCGCCAGCGCCGCGGCCCCGTGCGGTGTCCCTGAGCT
CCTGCTCCCCGCCGGGCTGCTCCGAGCAACGGTGCTTCGGAGCTCCAAACTCGGGCTGCCGGGG
CAAGTGTCTTCATGAACCCAGAGGATGTCCGGGAAGCACTACAAGGGTCCTGAAGTCAGTTGTT
GCATCAAATACTTCATATTTGGCTTCAATGTCATATTTTGGTTTTTGGGAATAACATTTCTTGG
AATTGGACTGTGGGCATGGAATGAAAAAGGAGTTCTGTCCAACATCTCTTCCATCACCGATCTC
GGCGGCTTTGACCCAGTTTGGCTCTTCCTTGTGGTGGGAGGAGTGATGTTCATTTTGGGATTTG
CAGGGTGCATTGGAGCGCTACGGGAAAACACTTTCCTTCTCAAGTTTTTTTCTGTGTTCCTGGG
AATTATTTTCTTCCTGGAGCTCACTGCCGGAGTTCTAGCATTTGTTTTCAAAGACTGGATCAAA
GACCAGCTGTATTTCTTTATAAACAACAACATCAGAGCATATCGGGATGACATTGATTTGCAAA
ACCTCATAGACTTCACCCAGGAATATTGGCAGTGCTGTGGGGCTTTTGGAGCTGATGATTGGAA
CCTAAATATTTACTTCAATTGCACAGATTCCAATGCAAGTCGAGAGCGATGTGGCGTTCCATTC
TCCTGCTGCACTAAAGATCCCGCAGAAGATGTCATCAACACTCAGTGTGGCTATGATGCCAGGC
AAAAACCAGAAGTTGACCAGCAGATTGTAATCTACACGAAAGGCTGTGTGCCCCAGTTTGAGAA
GTGGTTGCAGGACAATTTAACCATCGTTGCTGGTATTTTCATAGGCATTGCATTGCTGCAGATT
TTTGGGATATGCCTGGCCCAGAATTTGGTTAGCGATATCGAAGCTGTCAGGGCGAGCTGGTAGA
GCCCCTGCAACCGCTGCTGCAAGACACTGGACAGACCCAGCTTTCGGGACCCTCCCGCGTGCTG
AACTGATCTTCAAGCTGCATGGACCTAATCACAGATGCAGCCTGCAGTCTCGCCTAATGGAGCT
GCCATTAGGGGAGTGTAAAACTGGGAAATGCTGCTCACTGACAGAATTAAAAAGGAAAATAACC
AGTATGAAAGTCGTTGCGCCGTGAATCTCTACTGTAGCCATGAATTTATGGACAGTTGGATGCT
TACCAAAAAAGAAAAAAGGGAGGGTAGGGGGCCCAGATGTACTTGAATGTGCAGAAAATACATT
CTTGTCCTCATCTTCCGTAAGTGGAGGGCTGGGAGAGGCAGCTTTGCTCTTCACCACACCTTGG
ACGGACCACCTTCTGTTCCATGGCCTGAAGGAGTGCATCTCTTCAGACTCAGCCCCTCACCTGG
GAGGGCAGTGGTTTGTGGGCATCCCTCCATGTACATTTTAGGAAACACTTGCAACTCTCATCTG
AAGAAGAAAACAACTCATCTTTGGGTTCAGATTTTGTGATGGTATTCAGCAAGTCACTTGGGCG
AGCACACTTGGTCTATCCTGGAAAGTCTCCTTATAAGAGAAGTTGTGTATTTCATGTGCACCGA
GCAAGGGCATTGGAAGACGTCATGAGGCTGTATTTTAGCAGGACTGATCGTTTTTCTAAGTAGA
CCTGAGCTTTGTTTATCAGTGAAATTCAAGGAGAAAATGAGGTTAATGAAGAGGTATCAGTTAA
ATATCCCCTTCTCACCCTGCCAAAATTAGCAGTTGGATTTTTGGAAGCTCTGGAATATTCTGGG
TCATTTTGTTTTGTATGTTTGTTGTTTTTCGTCTTCCAAAGGTGAAAGCTATGATACAGTTCCA
CTTAAATTTTAGTGTTTTCTTACTCAGCTCAAGCATTAATTTTTGATTAAGTCTTAATCTGCAT
GACCTGTGAATCTGAATCCATCATCTCCCTTTCCTGCCAGCTTTTCTGCAAACATTGAAATATG
TTATTTGGTCAGCACTTATTTCCTAGGTTCACAGCCTTGGGAGGTTGTGGCATGTCCTCCCAGT
CTGGCTGGGAAGAGACCAGCTGTACCATCCAAATGCTTCCCTGGTCTTGATGATCTCTTCCAGA
GTCTATCTGAGTGGCCTCTTCTGCACCCTCCCCTTCTTTCTCTTTGAATGGAATTAAACCCAAT
TTGGAAACAACATTGACCCAGTCAAAAGCTTCTAATGGTTTCTTTTTCTTCCTCCAGTTTTAGT
TTGCTTTTATTAAAAAAGAAAATAGTGCATGGCCATAGCTCCTTCAGTTCTCTTATTGCAGACT
AACCATCAGGATGGTATCAAAGCACAAATACTTTGGAGGGGAATGCGTTGAACTGGGGCAAGTA
CTCTGTAACACAAAGTGGGAAACCACTTCCTGGTGCTGCCGCTCCTGCCCCCACTTTAGGTGGG
AGGGATGAGTTTTGCCCTCTAGATTTTAATCCAGCTGGTGGGTCCACCGGATGTTGCCCTCCTG
GGGAGCAGATATCAGTCTGTGGAACGCTGGGAAAACCACAGGCACATTTTTCGGTGCGGACAGA
TTTGCCAGCACATAACTGGGCAGCCAGCTAGAATACTTTGTGGAAATTAAGCGAGGTTTTCCAT
TTCAGCCCCATGGTGCATGGTGGTGGCCGATGAATGTGTCAGTCTGCTCAGAGAAAGGACAAAA
AGGAAATTATTTTCAAAACTGTGTTCACTGTTTGGGTGTGTGTATGGCTCTGCATGTGTGTGTT
TTTGTCTCTGTATAGGTAGAGGTGTTCACATCTTACTCCGACTGTAAGGTTGTCTTACTTCATC
TCTGCCCCCACCACAGTTGCCACTTTGTAATGTCCTTCCAACATGGAGAAGACACGAGCTCTCT
CCAGTTGGCATCATTTGTCTTTTTTGTTGATTGCCTCATTCTCCAGTGAACTCCATCTGGCCAG
TTGATTCAGAATCAGGCAAGATCCCTGCCCTTTGGCACATCCACTGAAAGGCCAAACAGCAAGT
CCGAGTGAGTTTTAAATATTAATTAATCACCCTTTATTTTTTACACTTGAGAGTGATTGTAATA
AAGGCTGTCATTAATAAACTTGGTTCTACCTTA

hide sequence

RefSeq Acc Id:

XM_008955318 ⟹ XP_008953566

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	96,537,654 - 96,718,539 (-)	NCBI
NHGRI_mPanPan1	4	96,815,612 - 96,994,454 (-)	NCBI
Mhudiblu_PPA_v0	4	90,872,988 - 91,052,342 (-)	NCBI
PanPan1.1	4	101,536,950 - 101,717,129 (-)	NCBI

Sequence:

show sequence

GAACCCAGAGGATGTCCGGGAAGCACTACAAGGGTCCTGAAGTCAGTTGTTGCATCAAATACTT
CATATTTGGCTTCAATGTCATATTTTGGTTTTTGGGAATAACATTTCTTGGAATTGGACTGTGG
GCATGGAATGAAAAATTTTCTGTGTTCCTGGGAATTATTTTCTTCCTGGAGCTCACTGCCGGAG
TTCTAGCATTTGTTTTCAAAGACTGGATCAAAGACCAGCTGTATTTCTTTATAAACAACAACAT
CAGAGCATATCGGGATGACATTGATTTGCAAAACCTCATAGACTTCACCCAGGAATATTGGCAG
TGCTGTGGGGCTTTTGGAGCTGATGATTGGAACCTAAATATTTACTTCAATTGCACAGATTCCA
ATGCAAGTCGAGAGCGATGTGGCGTTCCATTCTCCTGCTGCACTAAAGATCCCGCAGAAGATGT
CATCAACACTCAGTGTGGCTATGATGCCAGGCAAAAACCAGAAGTTGACCAGCAGATTGTAATC
TACACGAAAGGCTGTGTGCCCCAGTTTGAGAAGTGGTTGCAGGACAATTTAACCATCGTTGCTG
GTATTTTCATAGGCATTGCATTGCTGCAGATTTTTGGGATATGCCTGGCCCAGAATTTGGTTAG
CGATATCGAAGCTGTCAGGGCGAGCTGGTAGAGCCCCTGCAACCGCTGCTGCAAGACACTGGAC
AGACCCAGCTTTCGGGACCCTCCCGCGTGCTGAACTGATCTTCAAGCTGCATGGACCTAATCAC
AGATGCAGCCTGCAGTCTCGCCTAATGGAGCTGCCATTAGGGGAGTGTAAAACTGGGAAATGCT
GCTCACTGACAGAATTAAAAAGGAAAATAACCAGTATGAAAGTCGTTGCGCCGTGAATCTCTAC
TGTAGCCATGAATTTATGGACAGTTGGATGCTTACCAAAAAAGAAAAAAGGGAGGGTAGGGGGC
CCAGATGTACTTGAATGTGCAGAAAATACATTCTTGTCCTCATCTTCCGTAAGTGGAGGGCTGG
GAGAGGCAGCTTTGCTCTTCACCACACCTTGGACGGACCACCTTCTGTTCCATGGCCTGAAGGA
GTGCATCTCTTCAGACTCAGCCCCTCACCTGGGAGGGCAGTGGTTTGTGGGCATCCCTCCATGT
ACATTTTAGGAAACACTTGCAACTCTCATCTGAAGAAGAAAACAACTCATCTTTGGGTTCAGAT
TTTGTGATGGTATTCAGCAAGTCACTTGGGCGAGCACACTTGGTCTATCCTGGAAAGTCTCCTT
ATAAGAGAAGTTGTGTATTTCATGTGCACCGAGCAAGGGCATTGGAAGACGTCATGAGGCTGTA
TTTTAGCAGGACTGATCGTTTTTCTAAGTAGACCTGAGCTTTGTTTATCAGTGAAATTCAAGGA
GAAAATGAGGTTAATGAAGAGGTATCAGTTAAATATCCCCTTCTCACCCTGCCAAAATTAGCAG
TTGGATTTTTGGAAGCTCTGGAATATTCTGGGTCATTTTGTTTTGTATGTTTGTTGTTTTTCGT
CTTCCAAAGGTGAAAGCTATGATACAGTTCCACTTAAATTTTAGTGTTTTCTTACTCAGCTCAA
GCATTAATTTTTGATTAAGTCTTAATCTGCATGACCTGTGAATCTGAATCCATCATCTCCCTTT
CCTGCCAGCTTTTCTGCAAACATTGAAATATGTTATTTGGTCAGCACTTATTTCCTAGGTTCAC
AGCCTTGGGAGGTTGTGGCATGTCCTCCCAGTCTGGCTGGGAAGAGACCAGCTGTACCATCCAA
ATGCTTCCCTGGTCTTGATGATCTCTTCCAGAGTCTATCTGAGTGGCCTCTTCTGCACCCTCCC
CTTCTTTCTCTTTGAATGGAATTAAACCCAATTTGGAAACAACATTGACCCAGTCAAAAGCTTC
TAATGGTTTCTTTTTCTTCCTCCAGTTTTAGTTTGCTTTTATTAAAAAAGAAAATAGTGCATGG
CCATAGCTCCTTCAGTTCTCTTATTGCAGACTAACCATCAGGATGGTATCAAAGCACAAATACT
TTGGAGGGGAATGCGTTGAACTGGGGCAAGTACTCTGTAACACAAAGTGGGAAACCACTTCCTG
GTGCTGCCGCTCCTGCCCCCACTTTAGGTGGGAGGGATGAGTTTTGCCCTCTAGATTTTAATCC
AGCTGGTGGGTCCACCGGATGTTGCCCTCCTGGGGAGCAGATATCAGTCTGTGGAACGCTGGGA
AAACCACAGGCACATTTTTCGGTGCGGACAGATTTGCCAGCACATAACTGGGCAGCCAGCTAGA
ATACTTTGTGGAAATTAAGCGAGGTTTTCCATTTCAGCCCCATGGTGCATGGTGGTGGCCGATG
AATGTGTCAGTCTGCTCAGAGAAAGGACAAAAAGGAAATTATTTTCAAAACTGTGTTCACTGTT
TGGGTGTGTGTATGGCTCTGCATGTGTGTGTTTTTGTCTCTGTATAGGTAGAGGTGTTCACATC
TTACTCCGACTGTAAGGTTGTCTTACTTCATCTCTGCCCCCACCACAGTTGCCACTTTGTAATG
TCCTTCCAACATGGAGAAGACACGAGCTCTCTCCAGTTGGCATCATTTGTCTTTTTTGTTGATT
GCCTCATTCTCCAGTGAACTCCATCTGGCCAGTTGATTCAGAATCAGGCAAGATCCCTGCCCTT
TGGCACATCCACTGAAAGGCCAAACAGCAAGTCCGAGTGAGTTTTAAATATTAATTAATCACCC
TTTATTTTTTACACTTGAGAGTGATTGTAATAAAGGCTGTCATTAATAAACTTGGTTCTACCTT
A

hide sequence

RefSeq Acc Id:

XM_055111650 ⟹ XP_054967625

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	96,537,654 - 96,597,827 (-)	NCBI
NHGRI_mPanPan1	4	96,815,612 - 96,875,764 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003829966	(Get FASTA)	NCBI Sequence Viewer
	XP_008953566	(Get FASTA)	NCBI Sequence Viewer
	XP_054967625	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000042601.1
	ENSPPAP00000042604
	ENSPPAP00000042604.1
	ENSPPAP00000042606.1

RefSeq Acc Id:	XP_003829966 ⟸ XM_003829918
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9CKV7 (UniProtKB/TrEMBL), A0A2R9CKX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGKHYKGPEVSCCIKYFIFGFNVIFWFLGITFLGIGLWAWNEKGVLSNISSITDLGGFDPVWL FLVVGGVMFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKDQLYFFIN NNIRAYRDDIDLQNLIDFTQEYWQCCGAFGADDWNLNIYFNCTDSNASRERCGVPFSCCTKDPA EDVINTQCGYDARQKPEVDQQIVIYTKGCVPQFEKWLQDNLTIVAGIFIGIALLQIFGICLAQN LVSDIEAVRASW hide sequence

RefSeq Acc Id:

XP_008953566 ⟸ XM_008955318

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSGKHYKGPEVSCCIKYFIFGFNVIFWFLGITFLGIGLWAWNEKFSVFLGIIFFLELTAGVLAF
VFKDWIKDQLYFFINNNIRAYRDDIDLQNLIDFTQEYWQCCGAFGADDWNLNIYFNCTDSNASR
ERCGVPFSCCTKDPAEDVINTQCGYDARQKPEVDQQIVIYTKGCVPQFEKWLQDNLTIVAGIFI
GIALLQIFGICLAQNLVSDIEAVRASW

hide sequence

Ensembl Acc Id:

ENSPPAP00000042601 ⟸ ENSPPAT00000065531

Ensembl Acc Id:

ENSPPAP00000042606 ⟸ ENSPPAT00000065536

Ensembl Acc Id:

ENSPPAP00000042604 ⟸ ENSPPAT00000065534

RefSeq Acc Id:	XP_054967625 ⟸ XM_055111650
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000043859	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000065531.1	UniProtKB/TrEMBL
	ENSPPAT00000065534.1	UniProtKB/TrEMBL
	ENSPPAT00000065536.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1450.10	UniProtKB/TrEMBL
InterPro	Tetraspanin/Peripherin	UniProtKB/TrEMBL
	Tetraspanin_animals	UniProtKB/TrEMBL
	Tetraspanin_CS	UniProtKB/TrEMBL
	Tetraspanin_EC2_sf	UniProtKB/TrEMBL
KEGG Report	pps:100967296	UniProtKB/TrEMBL
NCBI Gene	TSPAN5	ENTREZGENE
PANTHER	PTHR19282	UniProtKB/TrEMBL
	TETRASPANIN-5	UniProtKB/TrEMBL
Pfam	Tetraspanin	UniProtKB/TrEMBL
PIRSF	Tetraspanin	UniProtKB/TrEMBL
PRINTS	TMFOUR	UniProtKB/TrEMBL
PROSITE	TM4_1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48652	UniProtKB/TrEMBL
UniProt	A0A2R9CKV7	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9CKX0_PANPA	UniProtKB/TrEMBL
	A0A2R9CKX6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar