FAM181A (family with sequence similarity 181 member A) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: FAM181A (family with sequence similarity 181 member A) Pan paniscus
Analyze
Symbol: FAM181A
Name: family with sequence similarity 181 member A
RGD ID: 12034921
Description: ASSOCIATED WITH achondrogenesis type IA (ortholog); DICER1 syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21595,066,790 - 95,087,319 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11494,290,785 - 94,303,824 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01474,549,016 - 74,562,068 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11493,885,169 - 93,895,892 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1493,891,392 - 93,895,892 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

References

Genomics

Comparative Map Data
FAM181A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21595,066,790 - 95,087,319 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11494,290,785 - 94,303,824 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01474,549,016 - 74,562,068 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11493,885,169 - 93,895,892 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1493,891,392 - 93,895,892 (+)Ensemblpanpan1.1panPan2
FAM181A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381493,918,894 - 93,929,608 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1493,918,894 - 93,929,608 (+)EnsemblGRCh38hg38GRCh38
GRCh371494,385,240 - 94,395,954 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361493,455,011 - 93,465,697 (+)NCBINCBI36Build 36hg18NCBI36
Build 341493,455,010 - 93,465,697NCBI
Celera1474,439,021 - 74,449,713 (+)NCBICelera
Cytogenetic Map14q32.12NCBI
HuRef1474,564,994 - 74,575,724 (+)NCBIHuRef
CHM1_11494,323,290 - 94,334,005 (+)NCBICHM1_1
T2T-CHM13v2.01488,146,203 - 88,156,917 (+)NCBIT2T-CHM13v2.0
Fam181a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912103,277,272 - 103,283,326 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12103,277,234 - 103,283,324 (+)EnsemblGRCm39 Ensembl
GRCm3812103,310,966 - 103,317,067 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12103,310,975 - 103,317,065 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712104,553,169 - 104,554,926 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612104,553,169 - 104,555,275 (+)NCBIMGSCv36mm8
Celera12104,531,875 - 104,533,763 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1252.9NCBI
Fam181a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86128,230,171 - 128,236,193 (+)NCBIGRCr8
mRatBN7.26122,465,373 - 122,471,397 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6122,465,391 - 122,471,397 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6122,610,408 - 122,612,467 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06122,905,672 - 122,907,731 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06122,240,160 - 122,242,214 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06127,202,428 - 127,208,968 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6127,207,732 - 127,208,610 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl6128,973,956 - 128,976,013 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06138,166,631 - 138,173,109 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46127,603,403 - 127,605,785 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6119,950,614 - 119,952,669 (+)NCBICelera
Cytogenetic Map6q32NCBI
Fam181a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543815,995,256 - 16,001,584 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543815,992,016 - 16,001,584 (+)NCBIChiLan1.0ChiLan1.0
FAM181A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1862,995,907 - 63,004,064 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl862,997,073 - 63,004,062 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha862,572,814 - 62,580,938 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0863,267,141 - 63,275,297 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl863,268,303 - 63,274,881 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1862,944,886 - 62,953,019 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0862,996,069 - 63,004,181 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0863,326,237 - 63,334,359 (+)NCBIUU_Cfam_GSD_1.0
Fam181a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864011,656,592 - 11,665,075 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367331,808,476 - 1,810,141 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367331,808,204 - 1,810,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM181A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.17115,204,147 - 115,208,845 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27121,885,867 - 121,887,172 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM181A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12471,678,583 - 71,682,815 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605358,918,419 - 58,920,746 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam181a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473410,309,678 - 10,316,075 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473410,304,641 - 10,314,251 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000059383   ⟹   ENSPPAP00000036491
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1493,891,392 - 93,895,892 (+)Ensembl
RefSeq Acc Id: XM_003832802   ⟹   XP_003832850
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21595,066,790 - 95,087,319 (+)NCBI
NHGRI_mPanPan11494,290,785 - 94,303,824 (+)NCBI
Mhudiblu_PPA_v01474,549,016 - 74,562,066 (+)NCBI
PanPan1.11493,885,169 - 93,895,892 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003832803   ⟹   XP_003832851
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21595,085,048 - 95,087,319 (+)NCBI
NHGRI_mPanPan11494,301,553 - 94,303,824 (+)NCBI
Mhudiblu_PPA_v01474,559,791 - 74,562,066 (+)NCBI
PanPan1.11493,893,123 - 93,895,892 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008958235   ⟹   XP_008956483
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21595,082,952 - 95,087,319 (+)NCBI
NHGRI_mPanPan11494,299,457 - 94,303,824 (+)NCBI
Mhudiblu_PPA_v01474,557,691 - 74,562,066 (+)NCBI
PanPan1.11493,891,392 - 93,895,892 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034938053   ⟹   XP_034793944
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21595,084,985 - 95,087,319 (+)NCBI
NHGRI_mPanPan11494,301,490 - 94,303,824 (+)NCBI
Mhudiblu_PPA_v01474,559,732 - 74,562,066 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003832850 (Get FASTA)   NCBI Sequence Viewer  
  XP_003832851 (Get FASTA)   NCBI Sequence Viewer  
  XP_008956483 (Get FASTA)   NCBI Sequence Viewer  
  XP_034793944 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000036491
  ENSPPAP00000036491.1
RefSeq Acc Id: XP_003832850   ⟸   XM_003832802
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008956483   ⟸   XM_008958235
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C3E3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003832851   ⟸   XM_003832803
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034793944   ⟸   XM_034938053
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000036491   ⟸   ENSPPAT00000059383


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041003 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000059383.1 UniProtKB/TrEMBL
Gene3D-CATH 6.20.430.10 UniProtKB/TrEMBL
InterPro FAM181 UniProtKB/TrEMBL
NCBI Gene FAM181A ENTREZGENE
PANTHER PROTEIN FAM181A UniProtKB/TrEMBL
  PTHR33766 UniProtKB/TrEMBL
Pfam FAM181 UniProtKB/TrEMBL
UniProt A0A2R9C3E3 ENTREZGENE, UniProtKB/TrEMBL