IL7 (interleukin 7) - Rat Genome Database

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Gene: IL7 (interleukin 7) Pan paniscus
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Symbol: IL7
Name: interleukin 7
RGD ID: 12033628
Description: ENCODES a protein that exhibits cytokine activity (inferred); cytokine receptor binding (inferred); growth factor activity (inferred); INVOLVED IN B cell proliferation (ortholog); bone resorption (ortholog); cellular response to hypoxia (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Brain Injuries (ortholog); COVID-19 (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin-7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2794,468,097 - 94,546,977 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1870,095,550 - 70,175,284 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0875,254,166 - 75,337,373 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1876,894,158 - 76,967,685 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl876,895,095 - 76,966,918 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
IL7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2794,468,097 - 94,546,977 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1870,095,550 - 70,175,284 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0875,254,166 - 75,337,373 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1876,894,158 - 76,967,685 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl876,895,095 - 76,966,918 (-)Ensemblpanpan1.1panPan2
IL7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38878,675,044 - 78,805,463 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl878,675,743 - 78,805,523 (-)EnsemblGRCh38hg38GRCh38
GRCh37879,645,007 - 79,717,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36879,807,560 - 79,880,313 (-)NCBINCBI36Build 36hg18NCBI36
Build 34879,807,560 - 79,880,313NCBI
Celera875,648,737 - 75,721,711 (-)NCBICelera
Cytogenetic Map8q21.13NCBI
HuRef875,134,557 - 75,207,310 (-)NCBIHuRef
CHM1_1879,696,615 - 79,769,400 (-)NCBICHM1_1
T2T-CHM13v2.0879,106,579 - 79,236,843 (-)NCBIT2T-CHM13v2.0
Il7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3937,637,088 - 7,678,820 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl37,635,054 - 7,678,820 (-)EnsemblGRCm39 Ensembl
GRCm3837,572,028 - 7,613,760 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl37,569,994 - 7,613,760 (-)EnsemblGRCm38mm10GRCm38
MGSCv3737,572,077 - 7,613,427 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3637,555,150 - 7,596,500 (-)NCBIMGSCv36mm8
Celera37,588,657 - 7,629,776 (-)NCBICelera
Cytogenetic Map3A1NCBI
cM Map32.02NCBI
Il7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8296,142,523 - 96,186,282 (+)NCBIGRCr8
mRatBN7.2294,235,219 - 94,280,075 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl294,234,766 - 94,280,075 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2100,777,208 - 100,821,004 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0298,898,266 - 98,942,070 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0293,955,118 - 93,998,914 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0296,427,884 - 96,474,979 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl296,439,286 - 96,474,977 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02116,171,246 - 116,216,348 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4296,356,083 - 96,399,796 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1296,301,044 - 96,344,792 (+)NCBI
Celera289,787,744 - 89,831,293 (+)NCBICelera
RH 3.4 Map2592.4RGD
Cytogenetic Map2q23NCBI
Il7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554442,365,077 - 2,400,953 (+)NCBIChiLan1.0ChiLan1.0
IL7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12926,384,493 - 26,422,586 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2926,384,493 - 26,422,737 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2926,651,877 - 26,696,032 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02926,502,024 - 26,546,251 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2926,501,104 - 26,546,713 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12926,548,175 - 26,592,337 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02926,592,034 - 26,636,185 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02926,943,719 - 26,987,896 (-)NCBIUU_Cfam_GSD_1.0
Il7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530352,717,829 - 52,769,445 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936702111,211 - 162,322 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936702110,625 - 162,957 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl457,684,796 - 57,744,709 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1457,677,895 - 57,744,713 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2462,888,668 - 62,949,085 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IL7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1874,230,493 - 74,292,985 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl874,231,809 - 74,292,384 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603966,940,681 - 67,051,084 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474412,567,661 - 12,604,074 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474412,562,536 - 12,604,037 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000009716   ⟹   ENSPPAP00000001986
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl876,895,095 - 76,960,373 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000009721   ⟹   ENSPPAP00000001991
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl876,895,095 - 76,960,373 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000009765   ⟹   ENSPPAP00000001993
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl876,895,095 - 76,960,373 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000009823   ⟹   ENSPPAP00000001998
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl876,908,455 - 76,966,918 (-)Ensembl
RefSeq Acc Id: XM_003831287   ⟹   XP_003831335
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2794,468,097 - 94,546,975 (-)NCBI
NHGRI_mPanPan1870,095,550 - 70,175,284 (-)NCBI
Mhudiblu_PPA_v0875,254,166 - 75,337,373 (-)NCBI
PanPan1.1876,894,158 - 76,967,685 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063606832   ⟹   XP_063462902
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2794,468,097 - 94,546,977 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003831335 (Get FASTA)   NCBI Sequence Viewer  
  XP_063462902 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000001986
  ENSPPAP00000001986.1
  ENSPPAP00000001991.1
  ENSPPAP00000001993.1
  ENSPPAP00000001998.1
RefSeq Acc Id: XP_003831335   ⟸   XM_003831287
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZAD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000001986   ⟸   ENSPPAT00000009716
RefSeq Acc Id: ENSPPAP00000001991   ⟸   ENSPPAT00000009721
RefSeq Acc Id: ENSPPAP00000001993   ⟸   ENSPPAT00000009765
RefSeq Acc Id: ENSPPAP00000001998   ⟸   ENSPPAT00000009823
RefSeq Acc Id: XP_063462902   ⟸   XM_063606832
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000008700 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000009716.1 UniProtKB/TrEMBL
  ENSPPAT00000009721.1 UniProtKB/TrEMBL
  ENSPPAT00000009765.1 UniProtKB/TrEMBL
  ENSPPAT00000009823.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.50 UniProtKB/TrEMBL
InterPro IL-7 UniProtKB/TrEMBL
  IL-7/IL-9_CS UniProtKB/TrEMBL
  IL7_sf UniProtKB/TrEMBL
NCBI Gene IL7 ENTREZGENE
PANTHER INTERLEUKIN-7 UniProtKB/TrEMBL
  INTERLEUKIN-7 UniProtKB/TrEMBL
Pfam IL7 UniProtKB/TrEMBL
PIRSF IL-7 UniProtKB/TrEMBL
PRINTS INTERLEUKIN7 UniProtKB/TrEMBL
PROSITE INTERLEUKIN_7_9 UniProtKB/TrEMBL
SMART IL7 UniProtKB/TrEMBL
UniProt A0A2R8ZAD5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZAD7_PANPA UniProtKB/TrEMBL
  A0A2R8ZEG5_PANPA UniProtKB/TrEMBL
  A0A2R8ZEH1_PANPA UniProtKB/TrEMBL