LOC100985441 (olfactory receptor 52N4)

Gene: LOC100985441 (olfactory receptor 52N4) Pan paniscus

Analyze

Symbol:

LOC100985441 (Ensembl: OR52N4)

Name:

olfactory receptor 52N4 (Ensembl:olfactory receptor family 52 subfamily N member 4)

RGD ID:

12033623

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	8,189,809 - 8,194,439 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	8,147,652 - 8,152,283 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	5,889,038 - 5,890,166 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	5,570,511 - 5,571,535 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	5,570,553 - 5,571,518 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

neuronal ceroid lipofuscinosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC100985441
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	8,189,809 - 8,194,439 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	8,147,652 - 8,152,283 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	5,889,038 - 5,890,166 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	5,570,511 - 5,571,535 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	5,570,553 - 5,571,518 (+)	Ensembl	panpan1.1		panPan2

OR52N4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	5,726,472 - 5,755,958 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	5,754,243 - 5,755,958 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	5,775,473 - 5,777,188 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	5,732,547 - 5,733,512 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	5,732,546 - 5,733,512	NCBI
Celera	11	5,894,984 - 5,896,020 (+)	NCBI		Celera
Cytogenetic Map	11	p15.4	NCBI
HuRef	11	5,435,344 - 5,436,380 (+)	NCBI		HuRef
CHM1_1	11	5,774,871 - 5,775,907 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	5,784,322 - 5,813,802 (+)	NCBI		T2T-CHM13v2.0

Or52n4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	104,292,087 - 104,296,512 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	104,292,084 - 104,296,512 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	104,642,880 - 104,647,305 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	104,642,877 - 104,647,305 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	111,791,394 - 111,795,819 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	104,516,701 - 104,521,126 (-)	NCBI		MGSCv36	mm8
Celera	7	104,917,372 - 104,921,798 (-)	NCBI		Celera
Cytogenetic Map	7	E3	NCBI
cM Map	7	55.69	NCBI

Or52n4c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	168,383,871 - 168,384,836 (+)	NCBI		GRCr8
mRatBN7.2	1	158,972,002 - 158,972,967 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	158,972,002 - 158,972,971 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	166,972,626 - 166,973,591 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	174,152,642 - 174,153,607 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	167,037,524 - 167,038,489 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	169,698,323 - 169,699,288 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	169,698,323 - 169,699,288 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	176,711,382 - 176,712,347 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	162,349,312 - 162,350,277 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	162,444,788 - 162,445,754 (+)	NCBI
Celera	1	156,955,839 - 156,956,804 (+)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

OR52N4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	28,865,361 - 28,866,326 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	28,865,361 - 28,866,326 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	28,626,687 - 28,627,652 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	29,684,875 - 29,685,840 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	29,684,875 - 29,685,840 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	29,007,929 - 29,008,894 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	29,197,813 - 29,198,778 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	29,358,629 - 29,359,598 (+)	NCBI		UU_Cfam_GSD_1.0

LOC100516093
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	9	4,071,226 - 4,072,185 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	4,503,602 - 4,504,561 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003819049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000011944 ⟹ ENSPPAP00000002475

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	5,570,553 - 5,571,518 (+)	Ensembl

RefSeq Acc Id:

XM_003819049 ⟹ XP_003819097

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	8,189,809 - 8,194,439 (+)	NCBI
NHGRI_mPanPan1	11	8,147,652 - 8,152,283 (+)	NCBI
Mhudiblu_PPA_v0	11	5,889,038 - 5,890,166 (+)	NCBI
PanPan1.1	11	5,570,511 - 5,571,535 (+)	NCBI

Sequence:

show sequence

CCAGACAAATTTTGAGCTATTTCATAACCTACCAGACTTATCATGCTAACACTGAATAAAACAG
AACTAATACCAGCTTCATTTATTCTGAATGGAGTCCCAGGACTGGAAGACACACAACTCTGGAT
TTCCTTCCCATTCTGCTCTATGTATGTTGTGGCTATGGTAGGGAATTGTGGACTCCTCTACCTC
ATTCACTATGAGGATGCCCTGCACAAACCCATGTACTACTTCTTGGCCATGCTTTCCTTTACTG
ACCTTGTTATGTGCTCTAGTACAATCCCTAAAGCCCTCTGCATCTTCTGGTTTCATCTCAAGGA
CATTGGATTTGATGAATGCCTTGTCCAGATGTTCTTCATCCACACCTTCACAGGGATGGAGTCT
GGGGTGCTTATGCTTATGGCCCTGGATCGCTATGTGGCCATCTGCTACCCCTTACGCTATTCAA
CTATCCTCACCAATCCTGTAATTGCAAAGGTTGGGACTGCCACCTTCCTGAGAGGGGTATTACT
CATTATTCCCTTTACTTTCCTCACCAAGCGCCTGCCCTACTGCAGAGGCAATATACTTCCCCAT
ACCTACTGTGACCACATGTCTGTAGCCAAATTGTCCTGTGGTAATGTCAAGGTCAATGCCATCT
ATGGTCTGATGGTTGCCCTCCTGATTGGGGGCTTTGACATACTGTGTATCACCATCTCCTATAC
CATGATTCTCCGGGCAGTGGTCAGCCTCTCCTCAGCAGATGCTCGGCAGAAGGCCTTTAATACC
TGCATTGCCCACATTTGTGCCATTGTTTTCTCCTATACTCCAGCTTTCTTCTCCTTCTTTTCCC
ACCGCTTTGGGGAACACATAATCCCCCCTTCTTGCCACATCATTGTAGCCAATATTTATCTGCT
CCTACCACCCACTATGAACCCTATTGTCTATGGGGTGAAAACCAAACAGATACGAGACTGTGTC
ATAAGGATCCTTTCAGGTTCTAAGGATACCAAATCCTACAGCATGTGAATGAACACTTGCCAGG
A

hide sequence

Protein Sequences


Protein RefSeqs	XP_003819097	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000002475.1

RefSeq Acc Id:

XP_003819097 ⟸ XM_003819049

- Sequence:

show sequence

MLTLNKTELIPASFILNGVPGLEDTQLWISFPFCSMYVVAMVGNCGLLYLIHYEDALHKPMYYF
LAMLSFTDLVMCSSTIPKALCIFWFHLKDIGFDECLVQMFFIHTFTGMESGVLMLMALDRYVAI
CYPLRYSTILTNPVIAKVGTATFLRGVLLIIPFTFLTKRLPYCRGNILPHTYCDHMSVAKLSCG
NVKVNAIYGLMVALLIGGFDILCITISYTMILRAVVSLSSADARQKAFNTCIAHICAIVFSYTP
AFFSFFSHRFGEHIIPPSCHIIVANIYLLLPPTMNPIVYGVKTKQIRDCVIRILSGSKDTKSYS
M

hide sequence

RefSeq Acc Id:

ENSPPAP00000002475 ⟸ ENSPPAT00000011944

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000011000	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000011944.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
KEGG Report	pps:100985441	UniProtKB/TrEMBL
NCBI Gene	LOC100985441	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR 52N4	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 56B1-RELATED	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A2R8ZBN8_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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