ABCB5 (ATP binding cassette subfamily B member 5) - Rat Genome Database

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Gene: ABCB5 (ATP binding cassette subfamily B member 5) Pan paniscus
Analyze
Symbol: ABCB5
Name: ATP binding cassette subfamily B member 5
RGD ID: 12032658
Description: ENCODES a protein that exhibits ABC-type oligopeptide transporter activity (inferred); ABC-type transporter activity (inferred); ATP binding (inferred); INVOLVED IN eye development (inferred); regulation of membrane potential (inferred); transmembrane transport (inferred); ASSOCIATED WITH Colorectal Neoplasms (ortholog); genetic disease (ortholog); melanoma (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family B member 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2625,481,726 - 25,611,293 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1773,798,836 - 73,937,469 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0721,302,954 - 21,432,569 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1720,617,567 - 20,746,683 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl720,620,875 - 20,746,634 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ABCB5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2625,481,726 - 25,611,293 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1773,798,836 - 73,937,469 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0721,302,954 - 21,432,569 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1720,617,567 - 20,746,683 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl720,620,875 - 20,746,634 (+)Ensemblpanpan1.1panPan2
ABCB5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38720,615,667 - 20,757,008 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl720,615,667 - 20,777,038 (+)EnsemblGRCh38hg38GRCh38
GRCh37720,655,290 - 20,796,631 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36720,653,741 - 20,761,821 (+)NCBINCBI36Build 36hg18NCBI36
Build 34720,460,284 - 20,568,487NCBI
Celera720,639,480 - 20,782,083 (+)NCBICelera
Cytogenetic Map7p21.1NCBI
HuRef720,544,004 - 20,681,429 (+)NCBIHuRef
CHM1_1720,655,593 - 20,797,106 (+)NCBICHM1_1
T2T-CHM13v2.0720,750,588 - 20,892,996 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2720,706,592 - 20,847,927 (+)NCBI
Abcb5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912118,831,221 - 118,930,169 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12118,831,559 - 118,930,156 (-)EnsemblGRCm39 Ensembl
GRCm3812118,867,486 - 118,966,434 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12118,867,824 - 118,966,421 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712120,106,297 - 120,204,894 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612113,093,355 - 113,192,288 (-)NCBIMGSCv36mm8
MGSCv3612119,311,950 - 119,410,523 (-)NCBIMGSCv36mm8
Cytogenetic Map12F2NCBI
cM Map1263.48NCBI
Abcb5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86145,978,860 - 146,075,776 (-)NCBIGRCr8
mRatBN7.26139,836,528 - 139,932,830 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6139,835,949 - 139,932,830 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.06146,805,481 - 146,902,339 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6146,805,599 - 146,902,339 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06155,713,932 - 155,809,554 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46146,177,114 - 146,287,478 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6137,483,710 - 137,579,013 (-)NCBICelera
Cytogenetic Map6q33NCBI
Abcb5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541023,283,263 - 23,379,000 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541023,283,263 - 23,379,000 (+)NCBIChiLan1.0ChiLan1.0
ABCB5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11434,645,722 - 34,760,636 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1434,637,196 - 34,760,433 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1434,141,285 - 34,303,183 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01434,525,456 - 34,686,254 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1434,528,356 - 34,686,261 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11434,643,386 - 34,806,295 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01434,343,924 - 34,506,781 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01434,654,940 - 34,841,620 (+)NCBIUU_Cfam_GSD_1.0
Abcb5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511878,898,499 - 79,045,176 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365466,605,381 - 6,720,294 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365466,573,617 - 6,720,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCB5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl989,632,204 - 89,738,606 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1989,620,783 - 89,751,876 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2998,854,311 - 99,073,375 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABCB5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12137,491,638 - 37,620,002 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2137,492,483 - 37,619,527 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604266,955,825 - 67,084,061 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abcb5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247399,802,817 - 9,976,572 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008978731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000057024   ⟹   ENSPPAP00000034143
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl720,620,875 - 20,746,634 (+)Ensembl
RefSeq Acc Id: XM_008978731   ⟹   XP_008976979
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2625,481,726 - 25,611,293 (+)NCBI
NHGRI_mPanPan1773,798,836 - 73,937,469 (+)NCBI
Mhudiblu_PPA_v0721,302,954 - 21,432,569 (+)NCBI
PanPan1.1720,617,567 - 20,746,683 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008976979 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000034143.1
Reference Protein Sequences
RefSeq Acc Id: XP_008976979   ⟸   XM_008978731
- UniProtKB: A0A2R9BWT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000034143   ⟸   ENSPPAT00000057024
Protein Domains
ABC transmembrane type-1   ABC transporter


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039922 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000057024.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1560.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC1_TM_dom UniProtKB/TrEMBL
  ABC1_TM_sf UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Type_1_exporter UniProtKB/TrEMBL
NCBI Gene ABCB5 ENTREZGENE
PANTHER ALPHA-FACTOR-TRANSPORTING ATPASE UniProtKB/TrEMBL
  ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam ABC_membrane UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TM1F UniProtKB/TrEMBL
  ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF90123 UniProtKB/TrEMBL
UniProt A0A2R9BWT2 ENTREZGENE, UniProtKB/TrEMBL