LOC100994149 (protein S100-A7-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC100994149 (protein S100-A7-like) Pan paniscus
Analyze
Symbol: LOC100994149 (Ensembl: S100A7A)
Name: protein S100-A7-like (Ensembl:S100 calcium binding protein A7A)
RGD ID: 12031841
Description: ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent protein binding (inferred); identical protein binding (inferred); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (inferred); positive regulation of ERK1 and ERK2 cascade (inferred); positive regulation of granulocyte chemotaxis (inferred); FOUND IN collagen-containing extracellular matrix (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,412,716 - 96,419,809 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,148,420 - 96,155,513 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,769,308 - 128,775,998 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,398,397 - 132,405,084 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,398,383 - 132,405,084 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003817181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000046302   ⟹   ENSPPAP00000023477
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1132,398,383 - 132,405,084 (+)Ensembl
RefSeq Acc Id: XM_003817181   ⟹   XP_003817229
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2196,412,716 - 96,419,809 (-)NCBI
NHGRI_mPanPan1196,148,420 - 96,155,513 (-)NCBI
Mhudiblu_PPA_v01128,769,308 - 128,775,998 (+)NCBI
PanPan1.11132,398,397 - 132,405,084 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003817229 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000023477.1
  ENSPPAP00000039866.1
RefSeq Acc Id: XP_003817229   ⟸   XM_003817181
- UniProtKB: A0A2R9B881 (UniProtKB/TrEMBL),   A0A2R9CD46 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000023477   ⟸   ENSPPAT00000046302
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034917 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAG00000042606 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046302.1 UniProtKB/TrEMBL
  ENSPPAT00000062778.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  S-100_dom UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
KEGG Report pps:100994149 UniProtKB/TrEMBL
NCBI Gene LOC100994149 ENTREZGENE
PANTHER PROTEIN S100-A7 UniProtKB/TrEMBL
  PROTEIN S100-A7A UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/TrEMBL
Pfam S_100 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  S100_CABP UniProtKB/TrEMBL
SMART S_100 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A2R9B881 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CD46 ENTREZGENE, UniProtKB/TrEMBL