DPF1 (double PHD fingers 1) - Rat Genome Database

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Gene: DPF1 (double PHD fingers 1) Pan paniscus
Analyze
Symbol: DPF1
Name: double PHD fingers 1
RGD ID: 12031818
Description: ENCODES a protein that exhibits histone binding (inferred); histone H3K4 methyltransferase activity (inferred); metal ion binding (inferred); INVOLVED IN nervous system development (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN nBAF complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein neuro-d4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22044,497,664 - 44,516,778 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11946,368,445 - 46,387,559 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01935,301,009 - 35,320,126 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11943,875,879 - 43,888,611 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1943,875,879 - 43,889,021 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
DPF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22044,497,664 - 44,516,778 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11946,368,445 - 46,387,559 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01935,301,009 - 35,320,126 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11943,875,879 - 43,888,611 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1943,875,879 - 43,889,021 (-)Ensemblpanpan1.1panPan2
DPF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381938,211,006 - 38,229,695 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1938,211,006 - 38,229,714 (-)EnsemblGRCh38hg38GRCh38
GRCh371938,701,646 - 38,720,335 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361943,394,187 - 43,406,628 (-)NCBINCBI36Build 36hg18NCBI36
Celera1935,503,879 - 35,522,555 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1935,150,952 - 35,163,719 (-)NCBIHuRef
CHM1_11938,701,990 - 38,720,649 (-)NCBICHM1_1
T2T-CHM13v2.01941,013,164 - 41,031,861 (-)NCBIT2T-CHM13v2.0
Dpf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39729,003,366 - 29,017,017 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl729,003,376 - 29,017,668 (+)EnsemblGRCm39 Ensembl
GRCm38729,303,952 - 29,317,592 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl729,303,951 - 29,318,243 (+)EnsemblGRCm38mm10GRCm38
MGSCv37730,089,024 - 30,102,605 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36729,012,765 - 29,026,346 (+)NCBIMGSCv36mm8
Celera723,874,277 - 23,887,947 (+)NCBICelera
Cytogenetic Map7B1NCBI
cM Map716.94NCBI
Dpf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8193,729,683 - 93,743,425 (+)NCBIGRCr8
mRatBN7.2184,602,212 - 84,615,954 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl184,602,336 - 84,615,950 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx190,017,817 - 90,027,416 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0198,477,595 - 98,487,176 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0191,773,664 - 91,783,261 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0187,248,448 - 87,258,070 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl187,248,489 - 87,258,070 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0188,426,945 - 88,437,120 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,444,143 - 84,452,889 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1184,522,204 - 84,531,762 (+)NCBI
Celera178,992,981 - 79,002,564 (+)NCBICelera
Cytogenetic Map1q21NCBI
Dpf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554681,195,146 - 1,211,311 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554681,195,152 - 1,209,774 (+)NCBIChiLan1.0ChiLan1.0
DPF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11114,753,368 - 114,763,965 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1114,757,864 - 114,765,602 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1114,156,599 - 114,169,906 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01115,355,095 - 115,368,417 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1115,341,775 - 115,368,228 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11114,927,843 - 114,941,151 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01114,545,960 - 114,559,268 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01115,595,566 - 115,608,875 (+)NCBIUU_Cfam_GSD_1.0
Dpf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934912,839,485 - 12,848,440 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368011,004,832 - 1,017,924 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368011,004,841 - 1,013,784 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DPF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl647,142,702 - 47,155,346 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1647,142,006 - 47,155,340 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2642,620,257 - 42,627,472 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DPF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1632,855,371 - 32,873,889 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl632,856,436 - 32,868,067 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607310,795,683 - 10,815,054 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dpf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479411,700,139 - 11,714,979 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000062997   ⟹   ENSPPAP00000040084
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1943,875,879 - 43,888,611 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000063025   ⟹   ENSPPAP00000040112
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1943,876,233 - 43,889,021 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000063031   ⟹   ENSPPAP00000040118
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1943,876,233 - 43,888,264 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000063032   ⟹   ENSPPAP00000040119
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1943,876,233 - 43,888,264 (-)Ensembl
RefSeq Acc Id: XM_034944254   ⟹   XP_034800145
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22044,497,664 - 44,510,875 (-)NCBI
NHGRI_mPanPan11946,368,445 - 46,381,667 (-)NCBI
Mhudiblu_PPA_v01935,301,009 - 35,314,308 (-)NCBI
RefSeq Acc Id: XM_034944255   ⟹   XP_034800146
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22044,497,664 - 44,509,388 (-)NCBI
NHGRI_mPanPan11946,368,445 - 46,380,177 (-)NCBI
Mhudiblu_PPA_v01935,301,009 - 35,312,741 (-)NCBI
RefSeq Acc Id: XM_034944256   ⟹   XP_034800147
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22044,497,664 - 44,516,777 (-)NCBI
NHGRI_mPanPan11946,368,445 - 46,387,558 (-)NCBI
Mhudiblu_PPA_v01935,301,009 - 35,320,121 (-)NCBI
RefSeq Acc Id: XM_034944259   ⟹   XP_034800150
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22044,497,664 - 44,516,777 (-)NCBI
NHGRI_mPanPan11946,368,445 - 46,387,558 (-)NCBI
Mhudiblu_PPA_v01935,301,009 - 35,320,121 (-)NCBI
RefSeq Acc Id: XM_034944261   ⟹   XP_034800152
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22044,497,664 - 44,510,951 (-)NCBI
NHGRI_mPanPan11946,368,445 - 46,381,740 (-)NCBI
Mhudiblu_PPA_v01935,301,009 - 35,314,303 (-)NCBI
RefSeq Acc Id: XM_034944262   ⟹   XP_034800153
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22044,497,664 - 44,509,388 (-)NCBI
NHGRI_mPanPan11946,368,445 - 46,380,177 (-)NCBI
Mhudiblu_PPA_v01935,301,009 - 35,312,741 (-)NCBI
RefSeq Acc Id: XM_034944264   ⟹   XP_034800155
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22044,497,664 - 44,516,778 (-)NCBI
NHGRI_mPanPan11946,368,445 - 46,387,559 (-)NCBI
Mhudiblu_PPA_v01935,301,009 - 35,320,122 (-)NCBI
RefSeq Acc Id: XM_034944265   ⟹   XP_034800156
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22044,497,664 - 44,510,951 (-)NCBI
NHGRI_mPanPan11946,368,445 - 46,381,740 (-)NCBI
Mhudiblu_PPA_v01935,301,009 - 35,314,303 (-)NCBI
RefSeq Acc Id: XM_034944266   ⟹   XP_034800157
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22044,497,664 - 44,516,778 (-)NCBI
NHGRI_mPanPan11946,368,445 - 46,387,558 (-)NCBI
Mhudiblu_PPA_v01935,301,009 - 35,320,121 (-)NCBI
RefSeq Acc Id: XM_034944267   ⟹   XP_034800158
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22044,497,664 - 44,510,588 (-)NCBI
NHGRI_mPanPan11946,368,445 - 46,381,378 (-)NCBI
Mhudiblu_PPA_v01935,301,009 - 35,313,941 (-)NCBI
RefSeq Acc Id: XM_034944270   ⟹   XP_034800161
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22044,497,664 - 44,516,728 (-)NCBI
NHGRI_mPanPan11946,368,445 - 46,387,508 (-)NCBI
Mhudiblu_PPA_v01935,301,009 - 35,320,126 (-)NCBI
RefSeq Acc Id: XM_034944271   ⟹   XP_034800162
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22044,497,664 - 44,516,732 (-)NCBI
NHGRI_mPanPan11946,368,445 - 46,387,510 (-)NCBI
Mhudiblu_PPA_v01935,301,009 - 35,320,072 (-)NCBI
RefSeq Acc Id: XM_063600247   ⟹   XP_063456317
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22044,497,664 - 44,515,269 (-)NCBI
RefSeq Acc Id: XP_034800161   ⟸   XM_034944270
- Peptide Label: isoform X11
- UniProtKB: A0A2R9CDW7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800155   ⟸   XM_034944264
- Peptide Label: isoform X7
- UniProtKB: A0A2R9CP36 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800157   ⟸   XM_034944266
- Peptide Label: isoform X9
- UniProtKB: A0A2R9CDW7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800150   ⟸   XM_034944259
- Peptide Label: isoform X4
- UniProtKB: A0A2R9CDW7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800147   ⟸   XM_034944256
- Peptide Label: isoform X3
- UniProtKB: A0A2R9CP36 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800162   ⟸   XM_034944271
- Peptide Label: isoform X10
- UniProtKB: A0A2R9CP36 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800145   ⟸   XM_034944254
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CP36 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800156   ⟸   XM_034944265
- Peptide Label: isoform X8
- UniProtKB: A0A2R9CGF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800152   ⟸   XM_034944261
- Peptide Label: isoform X5
- UniProtKB: A0A2R9CGF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800158   ⟸   XM_034944267
- Peptide Label: isoform X10
- UniProtKB: A0A2R9CP36 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800146   ⟸   XM_034944255
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CP36 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800153   ⟸   XM_034944262
- Peptide Label: isoform X6
- UniProtKB: A0A2R9CDW7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000040118   ⟸   ENSPPAT00000063031
RefSeq Acc Id: ENSPPAP00000040119   ⟸   ENSPPAT00000063032
RefSeq Acc Id: ENSPPAP00000040112   ⟸   ENSPPAT00000063025
RefSeq Acc Id: ENSPPAP00000040084   ⟸   ENSPPAT00000062997
RefSeq Acc Id: XP_063456317   ⟸   XM_063600247
- Peptide Label: isoform X10
Protein Domains
C2H2-type   PHD-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042616 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062997.1 UniProtKB/TrEMBL
  ENSPPAT00000063025.1 UniProtKB/TrEMBL
  ENSPPAT00000063031.1 UniProtKB/TrEMBL
  ENSPPAT00000063032.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro Requiem/DPF_N_dom UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene DPF1 ENTREZGENE
PANTHER HL01030P-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN NEURO-D4 UniProtKB/TrEMBL
Pfam PHD UniProtKB/TrEMBL
  Requiem_N UniProtKB/TrEMBL
PROSITE ZF_PHD_2 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART PHD UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
UniProt A0A2R9CDW7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CE01_PANPA UniProtKB/TrEMBL
  A0A2R9CGF9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CP36 ENTREZGENE, UniProtKB/TrEMBL