LOC100971068 (olfactory receptor 10V1)

Gene: LOC100971068 (olfactory receptor 10V1) Pan paniscus

Analyze

Symbol:

LOC100971068 (Ensembl: OR10V1)

Name:

olfactory receptor 10V1 (Ensembl:olfactory receptor family 10 subfamily V member 1)

RGD ID:

12031576

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	60,839,761 - 60,842,700 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	61,882,894 - 61,885,811 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	54,935,210 - 54,936,650 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	58,384,377 - 58,385,306 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	58,384,377 - 58,385,306 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

leukocyte adhesion deficiency 3 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

signal transduction (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC100971068
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	60,839,761 - 60,842,700 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	61,882,894 - 61,885,811 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	54,935,210 - 54,936,650 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	58,384,377 - 58,385,306 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	58,384,377 - 58,385,306 (-)	Ensembl	panpan1.1		panPan2

OR10V1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	59,712,916 - 59,713,845 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	59,712,916 - 59,713,845 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	59,480,389 - 59,481,318 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	59,236,965 - 59,237,894 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	59,236,964 - 59,237,894	NCBI
Celera	11	56,843,132 - 56,844,061 (-)	NCBI		Celera
Cytogenetic Map	11	q12.1	NCBI
HuRef	11	55,827,644 - 55,828,573 (-)	NCBI		HuRef
CHM1_1	11	59,346,386 - 59,347,315 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	59,664,202 - 59,665,131 (-)	NCBI		T2T-CHM13v2.0

Or10v1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	11,873,387 - 11,874,316 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	11,863,929 - 11,875,443 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	11,896,023 - 11,896,952 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	11,886,565 - 11,898,079 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	11,970,513 - 11,971,442 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	11,963,068 - 11,963,997 (+)	NCBI		MGSCv36	mm8
Celera	19	12,585,809 - 12,586,738 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	8.56	NCBI

Or10v1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	218,232,478 - 218,233,407 (+)	NCBI		GRCr8
mRatBN7.2	1	208,807,725 - 208,808,654 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	208,792,327 - 208,812,306 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	217,182,386 - 217,183,315 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	224,158,307 - 224,159,236 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	216,936,823 - 216,937,752 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	228,317,412 - 228,318,341 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	228,317,412 - 228,318,341 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	235,380,204 - 235,381,133 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	214,724,237 - 214,725,166 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	214,882,666 - 214,883,596 (+)	NCBI
Celera	1	206,275,704 - 206,276,633 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

LOC102010827
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955511	4,140,985 - 4,141,914 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955511	4,140,948 - 4,141,914 (-)	NCBI	ChiLan1.0	ChiLan1.0

OR10V1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	37,071,666 - 37,072,595 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	37,071,666 - 37,072,595 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	36,719,388 - 36,720,317 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	37,710,055 - 37,710,984 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	37,710,055 - 37,710,984 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	37,300,073 - 37,301,002 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	36,875,966 - 36,876,895 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	37,505,673 - 37,506,602 (+)	NCBI		UU_Cfam_GSD_1.0

LOC100521428
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	11,783,066 - 11,784,022 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	11,783,066 - 11,784,022 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	11,193,405 - 11,194,775 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC101706996
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624864	1,117,567 - 1,118,496 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624864	1,117,567 - 1,118,496 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003826360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000009773 ⟹ ENSPPAP00000001995

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	58,384,377 - 58,385,306 (-)	Ensembl

RefSeq Acc Id:

XM_003826360 ⟹ XP_003826408

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	60,839,761 - 60,842,700 (-)	NCBI
NHGRI_mPanPan1	11	61,882,894 - 61,885,811 (-)	NCBI
Mhudiblu_PPA_v0	11	54,935,210 - 54,936,650 (-)	NCBI
PanPan1.1	11	58,384,377 - 58,385,306 (-)	NCBI

Sequence:

show sequence

ATGGAAGGAATAAATAAAACTGCAAAGATGCAGTTTTTCTTTCGTCCATTCTCACCTGACCCTG
AGGTCCAGATGCTGATTTTTGTGGTCTTCCTGATGATGTATCTGACCAGCCTCGGTGGAAATGC
TACAATTGCAGTCATTGTTCAGATCAATCATTCCCTCCACACCCCCATGTACTTTTTCCTGGCT
AATCTGGCAGTTCTAGAAATCTTCTATACATCTTCCATCACCCCATTGGCCTTGGCAAACCTCC
TTTCAATGGGCAAAACTCCTGTTTCCATCACGGGATGTGGCACCCAAATGTTTTTCTTTGTCTT
CTTGGGTGGGGCTGATTGCGTCCTGCTGGCAGTCATGGCTTATGACCGGTTTATAGCGATCTGT
CACCCTCTGCGATACAGGCTCATCATGAGCTGGTCCTTGTGTGTGGAGCTGCTGGTAGGCTCCT
TGGTGCTGGGGTTCCTGTTGTCACTTCCACTCACCATTTTAATCTTCCATCTCCCATTCTGCCA
CAATGATGAGATCTACCACTTCTACTGTGACATGCCTGCAGTCATGCGCCTGGCTTGTGCAGAC
ACATGCGTTCACAAGACTGCTCTGTATATCATCAGCTTCATCGTCCTTAGCATCCCCCTCTCAT
TGATCTCCATCTCCTATGTCTTCATCGTGGTAGCCATTTTACAGATCCGGTCAGCAGAAGGGCA
CCAGCAAGCCTACTCTACCTGCTCTTCTCACATCTTAGTGGTCCTCCTGCAGTATGGCTGCACC
AGCTTTATATACTTGTCCCCCAGTTCCAGCTACTCTCCTGAGATGGGCCGTGTGGTATCTGTGG
CCTACACATTTATCACTCCCATTTTAAACCCCTTGATCTATAGTTTGAGGAACAAGGAACTGAA
AGATGCCCTAAGGAAAGCATTGAGAAAATTCTAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_003826408	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000001995
	ENSPPAP00000001995.1

RefSeq Acc Id:

XP_003826408 ⟸ XM_003826360

- UniProtKB:

A0A2R8ZAE2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEGINKTAKMQFFFRPFSPDPEVQMLIFVVFLMMYLTSLGGNATIAVIVQINHSLHTPMYFFLA
NLAVLEIFYTSSITPLALANLLSMGKTPVSITGCGTQMFFFVFLGGADCVLLAVMAYDRFIAIC
HPLRYRLIMSWSLCVELLVGSLVLGFLLSLPLTILIFHLPFCHNDEIYHFYCDMPAVMRLACAD
TCVHKTALYIISFIVLSIPLSLISISYVFIVVAILQIRSAEGHQQAYSTCSSHILVVLLQYGCT
SFIYLSPSSSYSPEMGRVVSVAYTFITPILNPLIYSLRNKELKDALRKALRKF

hide sequence

RefSeq Acc Id:

ENSPPAP00000001995 ⟸ ENSPPAT00000009773

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000009037	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000009773.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
KEGG Report	pps:100971068	UniProtKB/TrEMBL
NCBI Gene	LOC100971068	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A2R8ZAE2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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