MYL9 (myosin light chain 9) - Rat Genome Database

Name: MYL9
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: MYL9 (myosin light chain 9) Pan paniscus

Analyze

Symbol:

MYL9

Name:

myosin light chain 9

RGD ID:

12031505

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); myosin heavy chain binding (inferred); INVOLVED IN myofibril assembly (inferred); platelet aggregation (inferred); ASSOCIATED WITH autosomal dominant familial visceral neuropathy (ortholog); brain edema (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN myofibril (inferred); myosin II complex (inferred); stress fiber (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

myosin regulatory light polypeptide 9

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MYL9 (myosin light chain 9)	NCBI	Ortholog
Mus musculus (house mouse):	Myl9 (myosin, light polypeptide 9, regulatory)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Myl9 (myosin light chain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Myl9 (myosin light chain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MYL9 (myosin light chain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Myl9 (myosin light chain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MYL9 (myosin light chain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MYL9 (myosin light chain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Myl9 (myosin light chain 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	42,279,928 - 42,288,524 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	42,273,027 - 42,281,623 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	32,875,033 - 32,883,444 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	33,993,483 - 34,001,850 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	33,993,482 - 34,001,850 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant familial visceral neuropathy (ISO)

brain edema (ISO)

Experimental Liver Cirrhosis (ISO)

familial hypertrophic cardiomyopathy (ISO)

focal epilepsy (ISO)

genetic disease (ISO)

intestinal pseudo-obstruction (ISO)

megacystis-microcolon-intestinal hypoperistalsis syndrome (ISO)

Megacystis-Microcolon-Intestinal Hypoperistalsis Syndrome 4 (ISO)

vascular disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

myofibril assembly (IEA)

platelet aggregation (IEA)

Cellular Component

myofibril (IEA)

myosin II complex (IEA)

stress fiber (IEA)

Z disc (IEA)

Molecular Function

calcium ion binding (IEA)

metal ion binding (IEA)

myosin heavy chain binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

MYL9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	42,279,928 - 42,288,524 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	42,273,027 - 42,281,623 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	32,875,033 - 32,883,444 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	33,993,483 - 34,001,850 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	33,993,482 - 34,001,850 (+)	Ensembl	panpan1.1		panPan2

MYL9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	36,541,519 - 36,551,447 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	36,541,497 - 36,551,447 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	35,169,922 - 35,179,850 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	34,603,311 - 34,611,640 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	34,603,310 - 34,611,640	NCBI
Celera	20	31,876,955 - 31,885,284 (+)	NCBI		Celera
Cytogenetic Map	20	q11.23	NCBI
HuRef	20	31,906,489 - 31,914,828 (+)	NCBI		HuRef
CHM1_1	20	35,071,604 - 35,079,943 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	38,265,393 - 38,275,321 (+)	NCBI		T2T-CHM13v2.0

Myl9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	156,617,373 - 156,623,578 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	156,617,340 - 156,623,578 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	156,775,408 - 156,781,657 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	156,775,420 - 156,781,658 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	156,601,200 - 156,607,393 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	156,466,480 - 156,473,099 (+)	NCBI		MGSCv36	mm8
Celera	2	162,711,261 - 162,717,300 (+)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	77.77	NCBI

Myl9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	165,742,020 - 165,748,409 (+)	NCBI		GRCr8
mRatBN7.2	3	145,281,943 - 145,288,333 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	145,281,937 - 145,288,333 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	149,147,449 - 149,153,815 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	157,764,308 - 157,770,672 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	155,503,588 - 155,509,943 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	152,857,573 - 152,863,961 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	152,857,592 - 152,863,960 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	158,832,628 - 158,839,014 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	147,190,252 - 147,193,865 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	147,083,685 - 147,099,304 (+)	NCBI
Celera	3	144,001,709 - 144,005,322 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

Myl9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	25,074,129 - 25,084,840 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	25,078,011 - 25,084,853 (-)	NCBI	ChiLan1.0	ChiLan1.0

MYL9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	25,322,800 - 25,329,937 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	25,322,800 - 25,329,932 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	24,968,470 - 24,975,583 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	26,016,251 - 26,023,373 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	26,016,254 - 26,026,256 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	25,298,835 - 25,305,944 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	25,393,729 - 25,400,833 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	25,884,650 - 25,891,763 (+)	NCBI		UU_Cfam_GSD_1.0

Myl9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	174,264,092 - 174,271,149 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936561	4,475,021 - 4,485,463 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936561	4,478,400 - 4,485,457 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MYL9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	39,788,199 - 39,795,293 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	39,788,165 - 39,795,240 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	45,264,926 - 45,272,001 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MYL9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	57,397,836 - 57,405,856 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	57,397,874 - 57,406,630 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666087	3,890,131 - 3,898,141 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Myl9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624842	2,975,987 - 2,982,953 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624842	2,975,992 - 2,982,956 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003831883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000059502 ⟹ ENSPPAP00000036610

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	33,993,482 - 34,001,850 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000059505 ⟹ ENSPPAP00000036613

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	33,996,908 - 34,001,278 (+)	Ensembl

RefSeq Acc Id:

XM_003831883 ⟹ XP_003831931

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	42,279,928 - 42,288,524 (+)	NCBI
NHGRI_mPanPan1	20	42,273,027 - 42,281,623 (+)	NCBI
Mhudiblu_PPA_v0	20	32,875,033 - 32,883,444 (+)	NCBI
PanPan1.1	20	33,993,483 - 34,001,850 (+)	NCBI

Sequence:

show sequence

CCTTGTAAGGCCCGGCCGCCACGCCCCGCCCCCGCCTGGAGTCCGGACCCGACGGCCGGCCCAG
TTCCACGCACCCAGCGAGCCCAAGCGCCTTCTCCGCACCAGGGAAGCCCCACCCACCAGAAGCC
AAGATGTCCAGCAAGCGGGCCAAAGCCAAGACCACCAAGAAGCGGCCACAGCGGGCCACATCCA
ATGTCTTCGCAATGTTTGACCAGTCCCAGATCCAGGAGTTTAAGGAGGCTTTCAACATGATTGA
CCAGAACCGTGATGGCTTCATTGACAAGGAGGACCTGCACGACATGCTGGCCTCGCTGGGGAAG
AACCCCACAGACGAATACCTGGAGGGCATGATGAGCGAGGCCCCGGGGCCCATCAACTTCACCA
TGTTCCTCACCATGTTTGGGGAGAAGCTGAACGGCACGGACCCCGAGGATGTGATTCGCAACGC
CTTTGCCTGCTTCGACGAGGAAGCCTCAGGTTTCATCCATGAGGACCACCTCCGGGAGCTGCTC
ACCACCATGGGTGACCGCTTCACAGATGAGGAAGTGGACGAGATGTACCGGGAGGCGCCCATTG
ATAAGAAAGGCAACTTCAACTACGTGGAGTTCACCCGCATCCTCAAACATGGCGCCAAGGATAA
AGACGACTAGGCCACCCCAGCCCCCCGACACCCCAGCCCCCGCCAGTCACCCCTCCCCGCACAC
ACCCATCCATACCAGCTCCCTGCCCATGACCCTCGCTCAGGGATCCCCCTTTGAGGGGTTAGGG
TCCCAGTTCCCAGTGGAAGAAACAGGCCAGGAGAAGTGCGTGCCGAGCTGAGGCAGATGTTCCC
ACAGTGACCCCAGAGCCCTGGGCTATAGTCTCTGACCCCTCCAGGGAAAGACCACCTTCTGGGG
ACATGGGCTGGAGGGCAGGACCTAGAGGCACCAAGGGAAGGCCCCATTCCGGGGCTGTTCCCCG
AGGAGGAAGGGAAGGGGCTCTGTGTGCCCCCCAGGAGGAAGAGGCCCTGAGTCCTGGGATCAGA
CACCCCTTCACGTGTATCCCCACACAAATGCAATCTCACCAAGGTCCCCTCTCAGTCCCCTTCC
CTACACCCTGACTGGCCACTGCCGCACACCCACCCAGAGCACACCACCCGCCATGGGAGTGTGC
TCAGGAGTCGCGGGCAGCGTGGACATCTGTCCCAGAGGAAGCAGAATCTCCAATAGAGGGCTGA
GCACTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_003831931	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000036610
	ENSPPAP00000036610.1
	ENSPPAP00000036613.1

RefSeq Acc Id:	XP_003831931 ⟸ XM_003831883
- UniProtKB:	A0A2R9C3V1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSKRAKAKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKN PTDEYLEGMMSEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLT TMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGAKDKDD hide sequence

RefSeq Acc Id:

ENSPPAP00000036613 ⟸ ENSPPAT00000059505

RefSeq Acc Id:

ENSPPAP00000036610 ⟸ ENSPPAT00000059502

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000041059	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000059502.1	UniProtKB/TrEMBL
	ENSPPAT00000059505.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
KEGG Report	pps:100995742	UniProtKB/TrEMBL
NCBI Gene	MYL9	ENTREZGENE
PANTHER	MYOSIN REGULATORY LIGHT CHAIN 2	UniProtKB/TrEMBL
	MYOSIN REGULATORY LIGHT POLYPEPTIDE 9	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A2R9C3V1	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9C6T5_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM