SIN3A (SIN3 transcription regulator family member A) - Rat Genome Database

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Gene: SIN3A (SIN3 transcription regulator family member A) Pan paniscus
Analyze
Symbol: SIN3A
Name: SIN3 transcription regulator family member A
RGD ID: 12030759
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); aging (ortholog); cellular protein localization (ortholog); PARTICIPATES IN DNA modification pathway; Hedgehog signaling pathway; ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN chromatin (ortholog); histone deacetylase complex (ortholog); kinetochore (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: paired amphipathic helix protein Sin3a; SIN3 transcription regulator homolog A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11573,881,500 - 73,966,560 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1573,881,500 - 73,966,506 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01554,285,587 - 54,371,376 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SIN3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11573,881,500 - 73,966,560 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1573,881,500 - 73,966,506 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01554,285,587 - 54,371,376 (-)NCBIMhudiblu_PPA_v0panPan3
SIN3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1575,369,379 - 75,455,842 (-)EnsemblGRCh38hg38GRCh38
GRCh381575,369,379 - 75,455,819 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371575,661,720 - 75,748,156 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361573,450,328 - 73,530,979 (-)NCBINCBI36hg18NCBI36
Build 341573,450,329 - 73,530,979NCBI
Celera1552,588,161 - 52,674,772 (-)NCBI
Cytogenetic Map15q24.2NCBI
HuRef1552,420,097 - 52,506,377 (-)NCBIHuRef
CHM1_11575,780,322 - 75,866,699 (-)NCBICHM1_1
Sin3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39956,979,271 - 57,035,652 (+)NCBIGRCm39mm39
GRCm39 Ensembl956,979,324 - 57,035,650 (+)Ensembl
GRCm38957,071,991 - 57,128,368 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl957,072,040 - 57,128,366 (+)EnsemblGRCm38mm10GRCm38
MGSCv37956,919,847 - 56,976,175 (+)NCBIGRCm37mm9NCBIm37
MGSCv36956,874,519 - 56,926,290 (+)NCBImm8
Celera954,295,792 - 54,352,077 (+)NCBICelera
Cytogenetic Map9BNCBI
cM Map930.89NCBI
Sin3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2857,481,539 - 57,536,195 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl857,481,573 - 57,536,192 (+)Ensembl
Rnor_6.0861,748,590 - 61,803,314 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl861,762,768 - 61,803,099 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0860,323,131 - 60,373,454 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4860,832,595 - 60,884,764 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1860,851,648 - 60,904,028 (+)NCBI
Celera856,953,107 - 57,002,726 (+)NCBICelera
Cytogenetic Map8q24NCBI
Sin3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554502,808,130 - 2,870,450 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554502,804,551 - 2,870,450 (+)NCBIChiLan1.0ChiLan1.0
SIN3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13038,231,844 - 38,306,665 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3038,232,680 - 38,382,635 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3038,162,224 - 38,237,534 (-)NCBI
ROS_Cfam_1.03038,436,823 - 38,512,188 (-)NCBI
UMICH_Zoey_3.13038,389,129 - 38,464,067 (-)NCBI
UNSW_CanFamBas_1.03038,434,094 - 38,509,422 (-)NCBI
UU_Cfam_GSD_1.03038,670,990 - 38,745,906 (-)NCBI
Sin3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640116,357,106 - 116,416,720 (-)NCBI
SpeTri2.0NW_00493647134,206,084 - 34,260,538 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SIN3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl758,176,166 - 58,245,762 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1758,171,821 - 58,246,126 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2762,861,102 - 62,934,329 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SIN3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1267,971,208 - 8,060,888 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl267,975,484 - 8,058,278 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048133,632,174 - 133,722,014 (-)NCBIVero_WHO_p1.0
Sin3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624894300,027 - 388,397 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000038923   ⟹   ENSPPAP00000016229
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1573,881,500 - 73,966,506 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000038936   ⟹   ENSPPAP00000016242
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1573,884,099 - 73,937,999 (-)Ensembl
RefSeq Acc Id: XM_003818961   ⟹   XP_003819009
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11573,881,500 - 73,966,506 (-)NCBI
Mhudiblu_PPA_v01554,285,587 - 54,371,376 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008972373   ⟹   XP_008970621
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11573,881,500 - 73,947,636 (-)NCBI
Mhudiblu_PPA_v01554,285,587 - 54,351,973 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034939158   ⟹   XP_034795049
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01554,285,587 - 54,367,252 (-)NCBI
RefSeq Acc Id: XM_034939159   ⟹   XP_034795050
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01554,285,587 - 54,367,245 (-)NCBI
RefSeq Acc Id: XM_034939160   ⟹   XP_034795051
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01554,285,587 - 54,367,226 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_003819009   ⟸   XM_003818961
- Sequence:
RefSeq Acc Id: XP_008970621   ⟸   XM_008972373
- Sequence:
RefSeq Acc Id: XP_034795049   ⟸   XM_034939158
RefSeq Acc Id: XP_034795050   ⟸   XM_034939159
RefSeq Acc Id: XP_034795051   ⟸   XM_034939160
RefSeq Acc Id: ENSPPAP00000016242   ⟸   ENSPPAT00000038936
RefSeq Acc Id: ENSPPAP00000016229   ⟸   ENSPPAT00000038923


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031190 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000016229 ENTREZGENE
NCBI Gene SIN3A ENTREZGENE