ZNF165 (zinc finger protein 165) - Rat Genome Database

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Gene: ZNF165 (zinc finger protein 165) Pan paniscus
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Symbol: ZNF165
Name: zinc finger protein 165
RGD ID: 12028123
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); ASSOCIATED WITH genetic disease (ortholog); megacolon (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103783479; uncharacterized LOC103783479
RGD Orthologs
Human
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,685,070 - 42,703,013 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,686,098 - 38,704,032 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0627,873,396 - 27,882,401 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,547,161 - 28,556,024 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,551,943 - 28,557,631 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF165
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,685,070 - 42,703,013 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,686,098 - 38,704,032 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0627,873,396 - 27,882,401 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,547,161 - 28,556,024 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,551,943 - 28,557,631 (+)Ensemblpanpan1.1panPan2
ZNF165
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,080,282 - 28,089,563 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,080,568 - 28,089,563 (+)EnsemblGRCh38hg38GRCh38
GRCh37628,048,060 - 28,057,341 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,154,551 - 28,165,320 (+)NCBINCBI36Build 36hg18NCBI36
Build 34628,154,550 - 28,165,317NCBI
Celera629,654,543 - 29,663,402 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef627,856,472 - 27,865,333 (+)NCBIHuRef
CHM1_1628,050,900 - 28,059,759 (+)NCBICHM1_1
T2T-CHM13v2.0627,950,300 - 27,959,582 (+)NCBIT2T-CHM13v2.0
ZNF165
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13525,245,643 - 25,253,477 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3525,103,348 - 25,110,914 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03525,543,170 - 25,550,738 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13525,208,392 - 25,215,952 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03525,261,221 - 25,268,777 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03526,729,005 - 26,737,115 (+)NCBIUU_Cfam_GSD_1.0
ZNF165
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl721,936,214 - 21,946,015 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1721,936,152 - 21,946,018 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2723,874,306 - 23,883,093 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF165
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11744,503,393 - 44,512,628 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1744,503,379 - 44,512,637 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604427,707,624 - 27,717,244 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000043149   ⟹   ENSPPAP00000020357
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl628,551,943 - 28,557,631 (+)Ensembl
RefSeq Acc Id: XM_003829672   ⟹   XP_003829720
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,685,070 - 42,703,013 (+)NCBI
NHGRI_mPanPan1638,686,098 - 38,704,032 (+)NCBI
Mhudiblu_PPA_v0627,873,396 - 27,882,401 (+)NCBI
PanPan1.1628,547,161 - 28,556,024 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008955033   ⟹   XP_008953281
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,685,070 - 42,703,013 (+)NCBI
NHGRI_mPanPan1638,686,098 - 38,704,032 (+)NCBI
Mhudiblu_PPA_v0627,873,396 - 27,882,396 (+)NCBI
PanPan1.1628,547,290 - 28,556,024 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055113271   ⟹   XP_054969246
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,685,070 - 42,703,013 (+)NCBI
NHGRI_mPanPan1638,686,098 - 38,704,032 (+)NCBI
RefSeq Acc Id: XM_055113272   ⟹   XP_054969247
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,685,070 - 42,703,013 (+)NCBI
NHGRI_mPanPan1638,686,098 - 38,704,032 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003829720 (Get FASTA)   NCBI Sequence Viewer  
  XP_008953281 (Get FASTA)   NCBI Sequence Viewer  
  XP_054969246 (Get FASTA)   NCBI Sequence Viewer  
  XP_054969247 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000020357.1
RefSeq Acc Id: XP_003829720   ⟸   XM_003829672
- UniProtKB: A0A2R9ASP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008953281   ⟸   XM_008955033
- UniProtKB: A0A2R9ASP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000020357   ⟸   ENSPPAT00000043149
RefSeq Acc Id: XP_054969247   ⟸   XM_055113272
- UniProtKB: A0A2R9ASP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054969246   ⟸   XM_055113271
- UniProtKB: A0A2R9ASP6 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type   SCAN box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033406 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043149.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:100982388 UniProtKB/TrEMBL
NCBI Gene ZNF165 ENTREZGENE
PANTHER ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 165 UniProtKB/TrEMBL
Pfam SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9ASP6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-20 ZNF165  zinc finger protein 165  LOC103783479  uncharacterized LOC103783479  Data merged from RGD:11926525 737654 PROVISIONAL