ME1 (malic enzyme 1) - Rat Genome Database

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Gene: ME1 (malic enzyme 1) Pan paniscus
Analyze
Symbol: ME1
Name: malic enzyme 1
RGD ID: 12028065
Description: ENCODES a protein that exhibits malic enzyme activity (ortholog); NADP binding (ortholog); INVOLVED IN response to hormone (ortholog); PARTICIPATES IN Leigh disease pathway; primary hyperoxaluria type 2 pathway; pyruvate decarboxylase deficiency pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADP-dependent malic enzyme
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25103,312,102 - 103,524,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16101,204,935 - 101,421,593 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0681,107,569 - 81,320,050 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1684,382,732 - 84,595,701 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl684,382,732 - 84,595,701 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
mitochondrion  (IEA,ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ME1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25103,312,102 - 103,524,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16101,204,935 - 101,421,593 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0681,107,569 - 81,320,050 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1684,382,732 - 84,595,701 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl684,382,732 - 84,595,701 (-)Ensemblpanpan1.1panPan2
ME1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38683,210,402 - 83,431,051 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl683,210,402 - 83,431,051 (-)EnsemblGRCh38hg38GRCh38
GRCh37683,920,121 - 84,140,770 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36683,976,827 - 84,197,498 (-)NCBINCBI36Build 36hg18NCBI36
Build 34683,977,975 - 84,197,499NCBI
Celera684,353,414 - 84,574,177 (-)NCBICelera
Cytogenetic Map6q14.2NCBI
HuRef681,148,328 - 81,370,879 (-)NCBIHuRef
CHM1_1684,017,801 - 84,238,482 (-)NCBICHM1_1
T2T-CHM13v2.0684,433,644 - 84,654,257 (-)NCBIT2T-CHM13v2.0
Me1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39986,463,416 - 86,577,967 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl986,463,424 - 86,578,006 (-)EnsemblGRCm39 Ensembl
GRCm38986,581,363 - 86,695,914 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl986,581,371 - 86,695,953 (-)EnsemblGRCm38mm10GRCm38
MGSCv37986,474,970 - 86,589,947 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36987,524,432 - 87,639,643 (-)NCBIMGSCv36mm8
MGSCv36986,378,094 - 86,492,941 (-)NCBIMGSCv36mm8
Celera983,658,088 - 83,772,920 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map946.58NCBI
Me1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8896,429,057 - 96,540,244 (-)NCBIGRCr8
mRatBN7.2887,549,043 - 87,660,251 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl887,549,043 - 87,660,304 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx893,229,577 - 93,340,927 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0891,428,778 - 91,540,131 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0889,270,059 - 89,381,778 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0894,256,830 - 94,368,834 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl894,256,839 - 94,368,834 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0893,769,078 - 93,863,611 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4891,839,845 - 91,955,917 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1891,860,614 - 91,975,372 (-)NCBI
Celera887,151,761 - 87,246,579 (-)NCBICelera
RH 3.4 Map8999.69RGD
Cytogenetic Map8q31NCBI
Me1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541110,938,944 - 11,065,085 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541110,938,580 - 11,084,171 (-)NCBIChiLan1.0ChiLan1.0
ME1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11243,623,413 - 43,793,590 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1243,624,945 - 43,828,775 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1243,436,816 - 43,632,406 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01244,390,732 - 44,586,598 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1244,390,736 - 44,586,656 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11243,730,159 - 43,925,658 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01243,679,098 - 43,858,889 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01243,840,059 - 44,036,221 (-)NCBIUU_Cfam_GSD_1.0
Me1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494678,899,805 - 79,044,563 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365107,426,347 - 7,571,553 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365107,425,983 - 7,571,090 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ME1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl182,799,684 - 82,991,085 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1182,799,878 - 82,989,895 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2193,051,393 - 93,241,425 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1p12NCBI
ME1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1137,889,211 - 8,112,793 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl137,887,984 - 8,112,533 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040184,102,580 - 184,333,948 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Me1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479911,166,398 - 11,382,662 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003816382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000061539   ⟹   ENSPPAP00000038635
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl684,382,732 - 84,595,701 (-)Ensembl
RefSeq Acc Id: XM_003816382   ⟹   XP_003816430
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v25103,312,102 - 103,524,703 (-)NCBI
NHGRI_mPanPan16101,204,935 - 101,421,593 (-)NCBI
Mhudiblu_PPA_v0681,107,569 - 81,320,050 (-)NCBI
PanPan1.1684,382,732 - 84,595,701 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003816430 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000038635.1
RefSeq Acc Id: XP_003816430   ⟸   XM_003816382
- Sequence:
RefSeq Acc Id: ENSPPAP00000038635   ⟸   ENSPPAT00000061539

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042031 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000061539.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10380 UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro Aminiacid_DH-like_N_sf UniProtKB/TrEMBL
  Malic_enzyme_CS UniProtKB/TrEMBL
  Malic_N_dom UniProtKB/TrEMBL
  Malic_N_dom_sf UniProtKB/TrEMBL
  Malic_NAD-bd UniProtKB/TrEMBL
  Malic_OxRdtase UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100974769 UniProtKB/TrEMBL
NCBI Gene ME1 ENTREZGENE
PANTHER MALIC ENZYME-RELATED UniProtKB/TrEMBL
  NADP-DEPENDENT MALIC ENZYME UniProtKB/TrEMBL
Pfam malic UniProtKB/TrEMBL
  Malic_M UniProtKB/TrEMBL
PIRSF PIRSF000106 UniProtKB/TrEMBL
PRINTS MALOXRDTASE UniProtKB/TrEMBL
PROSITE MALIC_ENZYMES UniProtKB/TrEMBL
SMART malic UniProtKB/TrEMBL
  Malic_M UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
  SSF53223 UniProtKB/TrEMBL
UniProt A0A2R9C9K1_PANPA UniProtKB/TrEMBL