VWA3B (von Willebrand factor A domain containing 3B) - Rat Genome Database

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Gene: VWA3B (von Willebrand factor A domain containing 3B) Pan paniscus
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Symbol: VWA3B
Name: von Willebrand factor A domain containing 3B
RGD ID: 12025731
Description: ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 22 (ortholog); Spinocerebellar Ataxias (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: von Willebrand factor A domain-containing protein 3B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21230,127,506 - 30,354,109 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A30,130,268 - 30,356,891 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,995,476 - 101,221,328 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A99,001,077 - 99,226,175 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)

References

Genomics

Comparative Map Data
VWA3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21230,127,506 - 30,354,109 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A30,130,268 - 30,356,891 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,995,476 - 101,221,328 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A99,001,077 - 99,226,175 (+)NCBIpanpan1.1PanPan1.1panPan2
VWA3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38298,087,167 - 98,330,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl298,087,116 - 98,313,299 (+)EnsemblGRCh38hg38GRCh38
GRCh37298,703,630 - 98,929,762 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36298,070,027 - 98,295,842 (+)NCBINCBI36Build 36hg18NCBI36
Celera292,907,511 - 93,133,132 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef292,468,832 - 92,694,531 (+)NCBIHuRef
CHM1_1298,707,922 - 98,933,729 (+)NCBICHM1_1
T2T-CHM13v2.0298,545,383 - 98,788,821 (+)NCBIT2T-CHM13v2.0
Vwa3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,068,372 - 37,226,689 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,065,677 - 37,226,694 (+)EnsemblGRCm39 Ensembl
GRCm38137,029,158 - 37,187,608 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,026,596 - 37,187,613 (+)EnsemblGRCm38mm10GRCm38
MGSCv37137,086,149 - 37,244,122 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,098,390 - 37,132,150 (+)NCBIMGSCv36mm8
Celera136,804,738 - 36,965,147 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.46NCBI
Vwa3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,746,307 - 46,915,436 (+)NCBIGRCr8
mRatBN7.2939,249,523 - 39,419,614 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,250,430 - 39,419,611 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0943,607,066 - 43,779,466 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,607,669 - 43,779,463 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0943,253,497 - 43,425,216 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4935,962,036 - 36,125,741 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera937,007,813 - 37,176,976 (+)NCBICelera
Cytogenetic Map9q21NCBI
Vwa3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554704,658,197 - 4,850,336 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554704,658,088 - 4,850,277 (+)NCBIChiLan1.0ChiLan1.0
VWA3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11044,279,047 - 44,508,129 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1044,305,262 - 44,508,139 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1044,201,547 - 44,430,816 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01045,152,236 - 45,381,567 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1045,178,428 - 45,381,569 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,862,497 - 45,091,710 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01045,153,560 - 45,383,065 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01045,329,205 - 45,558,780 (-)NCBIUU_Cfam_GSD_1.0
Vwa3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,027,440 - 84,213,494 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367441,280,438 - 1,466,425 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VWA3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,950,591 - 56,171,718 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1355,949,534 - 56,173,597 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2358,552,120 - 58,716,317 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VWA3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1141,804,752 - 2,039,785 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl141,812,852 - 1,985,116 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041169,297,543 - 169,559,074 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vwa3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247493,204,463 - 3,421,806 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247493,106,165 - 3,421,679 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_024927776   ⟹   XP_024783544
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21230,127,506 - 30,354,109 (-)NCBI
NHGRI_mPanPan12A30,130,268 - 30,356,891 (-)NCBI
Mhudiblu_PPA_v02A100,995,476 - 101,221,328 (-)NCBI
PanPan1.12A99,001,077 - 99,226,175 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055107627   ⟹   XP_054963602
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21230,128,511 - 30,354,109 (-)NCBI
NHGRI_mPanPan12A30,131,273 - 30,356,871 (-)NCBI
RefSeq Acc Id: XR_008624313
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21230,128,510 - 30,354,109 (-)NCBI
NHGRI_mPanPan12A30,131,272 - 30,356,871 (-)NCBI
RefSeq Acc Id: XR_008624314
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21230,128,511 - 30,354,109 (-)NCBI
NHGRI_mPanPan12A30,131,273 - 30,356,871 (-)NCBI
Protein Sequences
Protein RefSeqs XP_024783544 (Get FASTA)   NCBI Sequence Viewer  
  XP_054963602 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_024783544   ⟸   XM_024927776
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_054963602   ⟸   XM_055107627
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene VWA3B ENTREZGENE