STOM (stomatin) - Rat Genome Database

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Gene: STOM (stomatin) Pan paniscus
Analyze
Symbol: STOM
Name: stomatin
RGD ID: 12025510
Description: ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); RNA polymerase binding (ortholog); INVOLVED IN positive regulation by host of viral genome replication (ortholog); positive regulation of protein targeting to membrane (ortholog); positive regulation of viral process (ortholog); FOUND IN cytoplasm (ortholog); cytoskeleton (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19120,812,065 - 120,843,497 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9120,812,065 - 120,843,497 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0992,466,718 - 92,498,265 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
STOM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19120,812,065 - 120,843,497 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9120,812,065 - 120,843,497 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0992,466,718 - 92,498,265 (-)NCBIMhudiblu_PPA_v0panPan3
STOM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9121,338,987 - 121,370,304 (-)EnsemblGRCh38hg38GRCh38
GRCh389121,338,987 - 121,370,250 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh379124,101,265 - 124,132,528 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369123,141,174 - 123,172,366 (-)NCBINCBI36hg18NCBI36
Build 349121,180,910 - 121,212,099NCBI
Celera994,749,842 - 94,781,033 (-)NCBI
Cytogenetic Map9q33.2NCBI
HuRef993,719,010 - 93,750,325 (-)NCBIHuRef
CHM1_19124,248,150 - 124,279,466 (-)NCBICHM1_1
Stom
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39235,204,002 - 35,227,021 (-)NCBIGRCm39mm39
GRCm39 Ensembl235,203,998 - 35,226,988 (-)Ensembl
GRCm38235,313,990 - 35,337,009 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl235,313,986 - 35,336,976 (-)EnsemblGRCm38mm10GRCm38
MGSCv37235,169,510 - 35,192,529 (-)NCBIGRCm37mm9NCBIm37
MGSCv36235,135,999 - 35,159,018 (-)NCBImm8
Celera235,008,711 - 35,031,730 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map223.53NCBI
Stom
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2318,645,058 - 18,667,343 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl318,644,378 - 18,667,354 (-)Ensembl
Rnor_6.0314,515,576 - 14,538,199 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl314,514,868 - 14,538,241 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0319,833,117 - 19,855,740 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4314,392,978 - 14,415,288 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1314,289,349 - 14,311,660 (-)NCBI
Celera313,358,166 - 13,380,297 (-)NCBICelera
Cytogenetic Map3p11NCBI
Stom
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554196,643,012 - 6,675,513 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554196,642,807 - 6,673,407 (+)NCBIChiLan1.0ChiLan1.0
STOM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11174,270,409 - 74,284,277 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1174,270,409 - 74,284,670 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1172,681,251 - 72,707,208 (-)NCBI
ROS_Cfam_1.01175,407,981 - 75,434,168 (-)NCBI
UMICH_Zoey_3.11173,914,858 - 73,940,571 (-)NCBI
UNSW_CanFamBas_1.01173,945,746 - 73,971,919 (-)NCBI
UU_Cfam_GSD_1.01174,685,417 - 74,711,398 (-)NCBI
Stom
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947190,040,059 - 190,069,001 (-)NCBI
SpeTri2.0NW_0049364879,808,586 - 9,837,506 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STOM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1261,377,866 - 261,407,716 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11261,380,087 - 261,407,713 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21293,511,501 - 293,528,583 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STOM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11218,214,816 - 18,246,730 (+)NCBI
ChlSab1.1 Ensembl1218,214,928 - 18,244,595 (+)Ensembl
Vero_WHO_p1.0NW_02366603524,771,045 - 24,802,981 (-)NCBI
Stom
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476013,906,430 - 13,936,284 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003833109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000043761   ⟹   ENSPPAP00000020962
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9120,812,065 - 120,843,497 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000043769   ⟹   ENSPPAP00000020970
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9120,814,191 - 120,832,435 (-)Ensembl
RefSeq Acc Id: XM_003833109   ⟹   XP_003833157
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.19120,812,065 - 120,843,497 (-)NCBI
Mhudiblu_PPA_v0992,466,718 - 92,498,265 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003833157 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003833157   ⟸   XM_003833109
- Sequence:
RefSeq Acc Id: ENSPPAP00000020970   ⟸   ENSPPAT00000043769
RefSeq Acc Id: ENSPPAP00000020962   ⟸   ENSPPAT00000043761


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033707 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000020962 ENTREZGENE
NCBI Gene STOM ENTREZGENE