ADH5 (alcohol dehydrogenase 5 (class III), chi polypeptide) - Rat Genome Database

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Gene: ADH5 (alcohol dehydrogenase 5 (class III), chi polypeptide) Pan paniscus
Analyze
Symbol: ADH5
Name: alcohol dehydrogenase 5 (class III), chi polypeptide
RGD ID: 12024179
Description: ENCODES a protein that exhibits alcohol dehydrogenase (NAD+) activity (ortholog); INVOLVED IN aging (ortholog); ethanol catabolic process (ortholog); formaldehyde catabolic process (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); AMED syndrome (ortholog); asthma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alcohol dehydrogenase class-3
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14102,134,375 - 102,151,902 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4102,134,375 - 102,151,902 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0491,470,304 - 91,487,854 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
ADH5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14102,134,375 - 102,151,902 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4102,134,375 - 102,151,902 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0491,470,304 - 91,487,854 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ADH5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38499,070,978 - 99,088,788 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl499,070,978 - 99,088,801 (-)EnsemblGRCh38hg38GRCh38
GRCh37499,992,129 - 100,009,939 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364100,211,152 - 100,228,954 (-)NCBINCBI36Build 36hg18NCBI36
Build 344100,349,540 - 100,367,191NCBI
Celera497,289,594 - 97,307,408 (-)NCBICelera
Cytogenetic Map4q23NCBI
HuRef495,730,971 - 95,748,768 (-)NCBIHuRef
CHM1_1499,969,101 - 99,986,899 (-)NCBICHM1_1
T2T-CHM13v2.04102,385,880 - 102,403,688 (-)NCBIT2T-CHM13v2.0
Adh5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393138,142,961 - 138,161,260 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3138,148,854 - 138,161,260 (+)EnsemblGRCm39 Ensembl
GRCm383138,437,200 - 138,455,499 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3138,443,093 - 138,455,499 (+)EnsemblGRCm38mm10GRCm38
MGSCv373138,106,128 - 138,118,463 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363138,380,551 - 138,392,886 (+)NCBIMGSCv36mm8
Celera3144,865,856 - 144,878,188 (+)NCBICelera
Cytogenetic Map3G3NCBI
Adh5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22226,975,184 - 226,987,591 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2226,947,466 - 226,987,591 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2234,723,921 - 234,736,337 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02232,623,648 - 232,636,062 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02227,488,332 - 227,500,747 (+)NCBIRnor_WKY
Rnor_6.02243,728,500 - 243,740,907 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2243,700,784 - 243,740,899 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02262,262,936 - 262,275,343 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42235,979,108 - 235,991,515 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2219,131,229 - 219,143,636 (+)NCBICelera
Cytogenetic Map2q44NCBI
ADH5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13221,249,459 - 21,261,130 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3221,249,739 - 21,265,048 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3220,665,071 - 20,680,669 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03221,435,360 - 21,451,154 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3221,432,077 - 21,451,233 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13221,401,221 - 21,416,820 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03221,228,031 - 21,243,728 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03218,651,920 - 18,667,674 (+)NCBIUU_Cfam_GSD_1.0
ADH5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8121,266,764 - 121,282,310 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18121,266,794 - 121,282,313 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28130,451,304 - 130,466,904 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ADH5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1747,190,031 - 47,211,670 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl747,190,294 - 47,211,651 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603725,620,607 - 25,643,036 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adh5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462502432,348 - 63,242 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462502432,237 - 60,983 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003829923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000034002   ⟹   ENSPPAP00000011347
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl4102,134,375 - 102,151,902 (-)Ensembl
RefSeq Acc Id: XM_003829923   ⟹   XP_003829971
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.14102,134,375 - 102,151,902 (-)NCBI
Mhudiblu_PPA_v0491,470,304 - 91,487,854 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003829971 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003829971   ⟸   XM_003829923
- Sequence:
RefSeq Acc Id: ENSPPAP00000011347   ⟸   ENSPPAT00000034002
Protein Domains
Enoyl reductase (ER)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028876 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000011347.1 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034002.1 UniProtKB/TrEMBL
InterPro ADH_3 UniProtKB/TrEMBL
  ADH_C UniProtKB/TrEMBL
  ADH_N UniProtKB/TrEMBL
  ADH_Zn_CS UniProtKB/TrEMBL
  GroES-like_sf UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  PKS_ER UniProtKB/TrEMBL
NCBI Gene ADH5 ENTREZGENE
Pfam ADH_N UniProtKB/TrEMBL
  ADH_zinc_N UniProtKB/TrEMBL
PROSITE ADH_ZINC UniProtKB/TrEMBL
SMART PKS_ER UniProtKB/TrEMBL
Superfamily-SCOP SSF50129 UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
TIGRFAMs adh_III_F_hyde UniProtKB/TrEMBL
UniProt A0A2R9A243_PANPA UniProtKB/TrEMBL