ARMH3 (armadillo like helical domain containing 3) - Rat Genome Database

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Gene: ARMH3 (armadillo like helical domain containing 3) Pan paniscus
Analyze
Symbol: ARMH3
Name: armadillo like helical domain containing 3
RGD ID: 12023905
Description: INVOLVED IN regulation of Golgi organization (inferred); ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN cytosol (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: armadillo-like helical domain containing 3; armadillo-like helical domain-containing protein 3; C10H10orf76; chromosome 10 C10orf76 homolog; UPF0668 protein C10orf76 homolog; UPF0668 protein C10orf76-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28113,732,301 - 113,945,096 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110113,737,620 - 113,959,689 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01098,448,251 - 98,670,235 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110101,920,359 - 102,130,148 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10101,920,359 - 102,130,150 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
Golgi membrane  (IEA)
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ARMH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28113,732,301 - 113,945,096 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110113,737,620 - 113,959,689 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01098,448,251 - 98,670,235 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110101,920,359 - 102,130,148 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10101,920,359 - 102,130,150 (-)Ensemblpanpan1.1panPan2
ARMH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810101,845,599 - 102,056,173 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10101,845,599 - 102,056,193 (-)EnsemblGRCh38hg38GRCh38
GRCh3710103,605,356 - 103,815,930 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610103,595,346 - 103,805,922 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410103,595,345 - 103,741,786NCBI
Celera1097,344,794 - 97,556,879 (-)NCBICelera
Cytogenetic Map10q24.32NCBI
HuRef1097,236,088 - 97,448,528 (-)NCBIHuRef
CHM1_110103,888,949 - 104,099,521 (-)NCBICHM1_1
T2T-CHM13v2.010102,729,087 - 102,941,253 (-)NCBIT2T-CHM13v2.0
Armh3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391945,805,799 - 45,987,071 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1945,805,803 - 45,986,927 (-)EnsemblGRCm39 Ensembl
GRCm381945,817,362 - 45,998,632 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1945,817,364 - 45,998,488 (-)EnsemblGRCm38mm10GRCm38
MGSCv371945,892,634 - 46,072,978 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361945,871,455 - 45,989,710 (-)NCBIMGSCv36mm8
Celera1946,580,092 - 46,760,555 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.75NCBI
Armh3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81254,615,274 - 254,797,673 (-)NCBIGRCr8
mRatBN7.21244,666,250 - 244,848,688 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1244,667,033 - 244,848,689 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1252,808,109 - 252,992,821 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01259,505,937 - 259,687,839 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01252,157,651 - 252,339,968 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01265,574,715 - 265,757,254 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1265,575,448 - 265,757,389 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01270,306,385 - 270,336,407 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01273,005,013 - 273,187,213 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41251,033,778 - 251,221,696 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1240,473,652 - 240,655,264 (-)NCBICelera
Cytogenetic Map1q54NCBI
Armh3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554858,286,896 - 8,454,706 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554858,297,785 - 8,453,165 (+)NCBIChiLan1.0ChiLan1.0
ARMH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12814,427,360 - 14,608,981 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2814,428,763 - 14,609,213 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2814,598,377 - 14,779,525 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02814,897,899 - 15,080,220 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2814,897,906 - 15,080,235 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12814,444,310 - 14,625,894 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02814,483,898 - 14,665,059 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02814,616,200 - 14,797,514 (-)NCBIUU_Cfam_GSD_1.0
Armh3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721332,158,694 - 32,335,123 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366003,761,889 - 3,940,998 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366003,761,929 - 3,938,348 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARMH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14112,877,308 - 113,072,897 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114112,877,289 - 113,072,999 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214122,728,451 - 122,924,831 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARMH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1994,876,713 - 95,090,079 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl994,873,699 - 95,071,654 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604855,952,343 - 56,180,035 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Armh3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248311,322,795 - 1,506,769 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248311,322,072 - 1,518,731 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003825509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034931347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034931349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034931350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034931351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034931352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034931353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055093311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055093312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004664836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010113275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000059034   ⟹   ENSPPAP00000036143
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl10101,920,359 - 102,130,150 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000059042   ⟹   ENSPPAP00000036151
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl10101,922,287 - 102,114,338 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000059046   ⟹   ENSPPAP00000036155
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl10101,922,287 - 102,114,338 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000059051   ⟹   ENSPPAP00000036160
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl10101,922,287 - 102,098,136 (-)Ensembl
RefSeq Acc Id: XM_003825509   ⟹   XP_003825557
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,732,301 - 113,945,093 (-)NCBI
NHGRI_mPanPan110113,737,620 - 113,950,412 (-)NCBI
Mhudiblu_PPA_v01098,448,258 - 98,661,033 (-)NCBI
PanPan1.110101,920,359 - 102,130,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034931347   ⟹   XP_034787238
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,732,301 - 113,945,082 (-)NCBI
NHGRI_mPanPan110113,737,620 - 113,950,395 (-)NCBI
Mhudiblu_PPA_v01098,448,251 - 98,661,041 (-)NCBI
RefSeq Acc Id: XM_034931349   ⟹   XP_034787240
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,732,301 - 113,945,083 (-)NCBI
NHGRI_mPanPan110113,737,620 - 113,950,396 (-)NCBI
Mhudiblu_PPA_v01098,448,258 - 98,661,042 (-)NCBI
RefSeq Acc Id: XM_034931350   ⟹   XP_034787241
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,732,301 - 113,945,083 (-)NCBI
NHGRI_mPanPan110113,737,620 - 113,950,396 (-)NCBI
Mhudiblu_PPA_v01098,448,258 - 98,661,043 (-)NCBI
RefSeq Acc Id: XM_034931351   ⟹   XP_034787242
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,732,301 - 113,945,084 (-)NCBI
NHGRI_mPanPan110113,737,620 - 113,950,397 (-)NCBI
Mhudiblu_PPA_v01098,448,258 - 98,661,043 (-)NCBI
RefSeq Acc Id: XM_034931352   ⟹   XP_034787243
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,732,301 - 113,945,080 (-)NCBI
NHGRI_mPanPan110113,737,620 - 113,950,391 (-)NCBI
Mhudiblu_PPA_v01098,448,258 - 98,661,035 (-)NCBI
RefSeq Acc Id: XM_034931353   ⟹   XP_034787244
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,732,301 - 113,922,155 (-)NCBI
NHGRI_mPanPan110113,737,620 - 113,927,474 (-)NCBI
Mhudiblu_PPA_v01098,448,258 - 98,638,141 (-)NCBI
RefSeq Acc Id: XM_055093311   ⟹   XP_054949286
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,732,301 - 113,945,096 (-)NCBI
NHGRI_mPanPan110113,737,620 - 113,950,391 (-)NCBI
RefSeq Acc Id: XM_055093312   ⟹   XP_054949287
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,732,301 - 113,945,080 (-)NCBI
NHGRI_mPanPan110113,737,620 - 113,950,391 (-)NCBI
RefSeq Acc Id: XM_063607863   ⟹   XP_063463933
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,732,301 - 113,945,085 (-)NCBI
RefSeq Acc Id: XM_063607864   ⟹   XP_063463934
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,732,301 - 113,945,081 (-)NCBI
RefSeq Acc Id: XM_063607865   ⟹   XP_063463935
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,732,301 - 113,945,082 (-)NCBI
RefSeq Acc Id: XM_063607866   ⟹   XP_063463936
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,732,301 - 113,914,891 (-)NCBI
RefSeq Acc Id: XM_063607867   ⟹   XP_063463937
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,732,301 - 113,914,891 (-)NCBI
RefSeq Acc Id: XR_010113275
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28113,734,184 - 113,945,090 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003825557   ⟸   XM_003825509
- Peptide Label: isoform X4
- UniProtKB: A0A2R9C5H6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034787238   ⟸   XM_034931347
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034787242   ⟸   XM_034931351
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034787241   ⟸   XM_034931350
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034787240   ⟸   XM_034931349
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034787243   ⟸   XM_034931352
- Peptide Label: isoform X8
- UniProtKB: A0A2R9C5H6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034787244   ⟸   XM_034931353
- Peptide Label: isoform X10
RefSeq Acc Id: ENSPPAP00000036160   ⟸   ENSPPAT00000059051
RefSeq Acc Id: ENSPPAP00000036143   ⟸   ENSPPAT00000059034
RefSeq Acc Id: ENSPPAP00000036155   ⟸   ENSPPAT00000059046
RefSeq Acc Id: ENSPPAP00000036151   ⟸   ENSPPAT00000059042
RefSeq Acc Id: XP_054949287   ⟸   XM_055093312
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054949286   ⟸   XM_055093311
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063463933   ⟸   XM_063607863
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063463935   ⟸   XM_063607865
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063463934   ⟸   XM_063607864
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063463937   ⟸   XM_063607867
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063463936   ⟸   XM_063607866
- Peptide Label: isoform X13
Protein Domains
Armadillo-like helical


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040734 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000059034.1 UniProtKB/TrEMBL
  ENSPPAT00000059042.1 UniProtKB/TrEMBL
  ENSPPAT00000059046.1 UniProtKB/TrEMBL
  ENSPPAT00000059051.1 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  ARMD3-like UniProtKB/TrEMBL
  DUF1741 UniProtKB/TrEMBL
KEGG Report pps:100982479 UniProtKB/TrEMBL
NCBI Gene C10H10orf76 ENTREZGENE
PANTHER ARMADILLO-LIKE HELICAL DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  PTHR13608 UniProtKB/TrEMBL
Pfam DUF1741 UniProtKB/TrEMBL
SMART DUF1741 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A2R9C2I9_PANPA UniProtKB/TrEMBL
  A0A2R9C2J9_PANPA UniProtKB/TrEMBL
  A0A2R9C2K4_PANPA UniProtKB/TrEMBL
  A0A2R9C5H6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-26 ARMH3  armadillo like helical domain containing 3    armadillo-like helical domain containing 3  Symbol and/or name change 5135510 APPROVED
2018-02-06 ARMH3  armadillo-like helical domain containing 3  C10H10orf76  chromosome 10 C10orf76 homolog  Symbol and/or name change 5135510 APPROVED