PER2 (period circadian regulator 2) - Rat Genome Database
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Gene: PER2 (period circadian regulator 2) Pan paniscus
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Symbol: PER2
Name: period circadian regulator 2
RGD ID: 12023701
Description: ENCODES a protein that exhibits histone deacetylase binding (ortholog); histone methyltransferase binding (ortholog); identical protein binding (ortholog); INVOLVED IN circadian regulation of gene expression (ortholog); circadian regulation of translation (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH advanced sleep phase syndrome (ortholog); advanced sleep phase syndrome 1 (ortholog); Alcoholic Intoxication (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: period circadian clock 2; period circadian protein homolog 2; period homolog 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B244,328,122 - 244,371,040 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B244,328,122 - 244,371,040 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B125,477,021 - 125,521,577 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
PER2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B244,328,122 - 244,371,040 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B244,328,122 - 244,371,040 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B125,477,021 - 125,521,577 (-)NCBIMhudiblu_PPA_v0panPan3
PER2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2238,244,044 - 238,290,102 (-)EnsemblGRCh38hg38GRCh38
GRCh382238,244,038 - 238,290,102 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372239,152,679 - 239,198,678 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,817,418 - 238,861,946 (-)NCBINCBI36hg18NCBI36
Build 342238,934,685 - 238,979,092NCBI
Celera2232,865,233 - 232,909,762 (-)NCBI
Cytogenetic Map2q37.3NCBI
HuRef2230,943,837 - 230,988,232 (-)NCBIHuRef
CHM1_12239,158,528 - 239,203,056 (-)NCBICHM1_1
Per2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39191,343,699 - 91,387,072 (-)NCBIGRCm39mm39
GRCm38191,415,977 - 91,459,351 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl191,415,982 - 91,459,324 (-)EnsemblGRCm38mm10GRCm38
MGSCv37193,312,559 - 93,355,905 (-)NCBIGRCm37mm9NCBIm37
MGSCv36193,246,388 - 93,289,702 (-)NCBImm8
Celera194,353,350 - 94,396,834 (-)NCBICelera
Cytogenetic Map1DNCBI
Per2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0998,555,154 - 98,597,362 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,555,169 - 98,597,359 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0998,231,202 - 98,273,371 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4990,645,342 - 90,687,509 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1990,850,110 - 90,892,278 (-)NCBI
Celera989,548,336 - 89,590,505 (-)NCBICelera
Cytogenetic Map9q36NCBI
Per2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555422,338,099 - 2,371,274 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555422,331,547 - 2,369,011 (+)NCBIChiLan1.0ChiLan1.0
PER2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2548,717,173 - 48,758,755 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12548,716,499 - 48,761,617 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Per2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936525221,601 - 263,284 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PER2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15137,793,419 - 137,837,236 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115137,793,419 - 137,837,854 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215152,264,819 - 152,284,153 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PER2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110124,270,917 - 124,316,031 (-)NCBI
ChlSab1.1 Ensembl10124,269,543 - 124,315,904 (-)Ensembl
Per2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248473,359,174 - 3,399,584 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000063565   ⟹   ENSPPAP00000040648
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B244,328,122 - 244,371,040 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000063571   ⟹   ENSPPAP00000040654
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B244,329,396 - 244,360,509 (-)Ensembl
RefSeq Acc Id: XM_003813090   ⟹   XP_003813138
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12B244,328,122 - 244,371,040 (-)NCBI
Mhudiblu_PPA_v02B125,477,021 - 125,521,392 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034955486   ⟹   XP_034811377
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B125,478,788 - 125,521,577 (-)NCBI
RefSeq Acc Id: XM_034955487   ⟹   XP_034811378
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v02B125,477,929 - 125,521,577 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003813138 (Get FASTA)   NCBI Sequence Viewer  
  XP_034811377 (Get FASTA)   NCBI Sequence Viewer  
  XP_034811378 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003813138   ⟸   XM_003813090
- Sequence:
RefSeq Acc Id: XP_034811378   ⟸   XM_034955487
RefSeq Acc Id: XP_034811377   ⟸   XM_034955486
RefSeq Acc Id: ENSPPAP00000040648   ⟸   ENSPPAT00000063565
RefSeq Acc Id: ENSPPAP00000040654   ⟸   ENSPPAT00000063571
Protein Domains
PAS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042957 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000040648 UniProtKB/TrEMBL
  ENSPPAP00000040654 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000063565 UniProtKB/TrEMBL
  ENSPPAT00000063571 UniProtKB/TrEMBL
InterPro PAS UniProtKB/TrEMBL
  PAS-like_dom_sf UniProtKB/TrEMBL
  PAS_fold_3 UniProtKB/TrEMBL
  Period_circadian-like_C UniProtKB/TrEMBL
KEGG Report pps:100971888 UniProtKB/TrEMBL
NCBI Gene PER2 ENTREZGENE
Pfam PAS_3 UniProtKB/TrEMBL
  Period_C UniProtKB/TrEMBL
PROSITE PAS UniProtKB/TrEMBL
SMART PAS UniProtKB/TrEMBL
Superfamily-SCOP SSF55785 UniProtKB/TrEMBL
UniProt A0A2R9CFH4_PANPA UniProtKB/TrEMBL
  A0A2R9CHZ7_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-10 PER2  period circadian regulator 2    period circadian clock 2  Symbol and/or name change 5135510 APPROVED