LOC100983712 (protein PET100 homolog, mitochondrial) - Rat Genome Database

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Gene: LOC100983712 (protein PET100 homolog, mitochondrial) Pan paniscus
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Symbol: LOC100983712
Name: protein PET100 homolog, mitochondrial
RGD ID: 12022215
Description: ASSOCIATED WITH Congenital Infantile Lactic Acidosis (ortholog); cytochrome-c oxidase deficiency disease (ortholog); familial hemophagocytic lymphohistiocytosis 5 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: PET100; PET100 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1197,774,461 - 7,776,340 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0196,919,469 - 6,921,359 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC100983712
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1197,774,461 - 7,776,340 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0196,919,469 - 6,921,359 (+)NCBIMhudiblu_PPA_v0panPan3
PET100
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl197,629,793 - 7,631,956 (+)EnsemblGRCh38hg38GRCh38
GRCh38197,629,793 - 7,631,956 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37197,694,679 - 7,696,842 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36197,600,677 - 7,602,961 (+)NCBINCBI36hg18NCBI36
Celera197,565,855 - 7,567,694 (+)NCBI
Cytogenetic Map19p13.2NCBI
HuRef197,364,339 - 7,366,226 (+)NCBIHuRef
CHM1_1197,694,422 - 7,696,261 (+)NCBICHM1_1
Pet100
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3983,671,551 - 3,674,235 (+)NCBIGRCm39mm39
GRCm39 Ensembl83,671,548 - 3,675,848 (+)Ensembl
GRCm3883,621,551 - 3,624,235 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl83,621,548 - 3,625,848 (+)EnsemblGRCm38mm10GRCm38
MGSCv3783,621,554 - 3,625,606 (+)NCBIGRCm37mm9NCBIm37
Celera83,851,883 - 3,855,935 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
Pet100
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2121,679,805 - 1,682,540 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl121,679,859 - 1,682,540 (+)Ensembl
Rnor_6.0122,170,630 - 2,173,259 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,170,630 - 2,173,251 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0124,332,962 - 4,335,591 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,531,225 - 2,533,448 (-)NCBIRGSC3.4rn4RGSC3.4
Celera123,535,650 - 3,538,316 (+)NCBICelera
Cytogenetic Map12p12NCBI
Pet100
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,628,746 - 1,630,307 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,628,746 - 1,630,307 (-)NCBIChiLan1.0ChiLan1.0
LOC611528
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,406,154 - 52,412,552 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,210,235 - 52,211,785 (+)NCBI
ROS_Cfam_1.02052,935,464 - 52,937,014 (+)NCBI
UMICH_Zoey_3.12052,139,263 - 52,140,813 (+)NCBI
UNSW_CanFamBas_1.02052,582,852 - 52,584,402 (+)NCBI
UU_Cfam_GSD_1.02052,813,857 - 52,815,407 (+)NCBI
LOC101966343
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,153,223 - 213,154,750 (-)NCBI
SpeTri2.0NW_0049365884,680,083 - 4,681,563 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PET100
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl271,519,390 - 71,520,926 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1271,519,395 - 71,520,820 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,911,816 - 71,913,241 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233807
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,116,233 - 7,118,101 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl67,116,314 - 7,118,030 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666081743,504 - 745,391 (-)NCBIVero_WHO_p1.0
Pet100
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624828712,087 - 713,801 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003810014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003810014   ⟹   XP_003810062
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1197,774,461 - 7,776,340 (+)NCBI
Mhudiblu_PPA_v0196,919,469 - 6,921,359 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003810062 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003810062   ⟸   XM_003810014
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040560 ENTREZGENE
Ensembl Protein ENSPPAP00000035501 ENTREZGENE
NCBI Gene PET100 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100983712  protein PET100 homolog, mitochondrial  PET100  PET100 homolog  Symbol and/or name change 5135510 APPROVED