CALML3 (calmodulin like 3) - Rat Genome Database

Name: CALML3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CALML3 (calmodulin like 3) Pan paniscus

Analyze

Symbol:

CALML3

Name:

calmodulin like 3

RGD ID:

12021751

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); enzyme regulator activity (inferred); metal ion binding (inferred); ASSOCIATED WITH genetic disease (ortholog); hepatocellular carcinoma (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

calmodulin-like protein 3

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CALML3 (calmodulin like 3)	NCBI	Ortholog
Mus musculus (house mouse):	Calml3 (calmodulin-like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Calml3 (calmodulin-like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC102153034 (calmodulin-like protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101976513 (calmodulin-like protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CALML3 (calmodulin like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Calml3 (calmodulin like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	18,077,300 - 18,079,428 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	18,082,644 - 18,084,751 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	5,565,223 - 5,567,471 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	5,550,835 - 5,553,087 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	5,551,906 - 5,552,355 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

hepatocellular carcinoma (ISO)

hypoparathyroidism-deafness-renal disease syndrome (ISO)

Lung Neoplasms (ISO)

Neoplasm Metastasis (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

calcium ion binding (IEA)

enzyme regulator activity (IEA)

metal ion binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CALML3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	18,077,300 - 18,079,428 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	18,082,644 - 18,084,751 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	5,565,223 - 5,567,471 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	5,550,835 - 5,553,087 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	5,551,906 - 5,552,355 (+)	Ensembl	panpan1.1		panPan2

CALML3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	5,524,961 - 5,526,771 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	5,524,961 - 5,526,771 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	5,566,924 - 5,568,734 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	5,556,924 - 5,558,225 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	5,556,923 - 5,558,225	NCBI
Celera	10	5,498,075 - 5,499,376 (+)	NCBI		Celera
Cytogenetic Map	10	p15.1	NCBI
HuRef	10	5,496,886 - 5,498,187 (+)	NCBI		HuRef
CHM1_1	10	5,566,804 - 5,568,105 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	5,528,229 - 5,530,040 (+)	NCBI		T2T-CHM13v2.0

Calml3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	3,852,893 - 3,854,318 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	3,852,896 - 3,854,316 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	3,802,893 - 3,804,318 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	3,802,896 - 3,804,316 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	3,802,139 - 3,803,564 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	3,802,141 - 3,803,562 (-)	NCBI		MGSCv36	mm8
Celera	13	3,786,628 - 3,788,053 (-)	NCBI		Celera
Cytogenetic Map	13	A1	NCBI
cM Map	13	2.13	NCBI

Calml3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	71,329,438 - 71,333,068 (+)	NCBI		GRCr8
mRatBN7.2	17	66,419,844 - 66,423,083 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	66,419,882 - 66,423,175 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	69,902,584 - 69,903,956 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	73,731,395 - 73,732,767 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	67,774,410 - 67,775,782 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	70,070,458 - 70,073,697 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	70,072,156 - 70,073,530 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	71,774,029 - 71,777,255 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	77,594,514 - 77,595,889 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	77,605,346 - 77,606,721 (+)	NCBI
Celera	17	65,927,353 - 65,928,728 (+)	NCBI		Celera
Cytogenetic Map	17	q12.2	NCBI

LOC102153034
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	30,410,830 - 30,411,981 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	27,440,705 - 27,441,958 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	30,791,914 - 30,793,167 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	30,792,586 - 30,793,035 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	27,888,217 - 27,889,574 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	28,725,362 - 28,726,615 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	29,443,053 - 29,444,306 (-)	NCBI		UU_Cfam_GSD_1.0

LOC101976513
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	32,811,313 - 32,812,782 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	8,977,252 - 8,977,701 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	8,976,512 - 8,977,792 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CALML3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	5,634,739 - 5,636,634 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	5,635,456 - 5,635,905 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	10,890,285 - 10,892,540 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Calml3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	337,054 - 337,503 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624775	335,860 - 338,267 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003827786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000027972 ⟹ ENSPPAP00000006554

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	10	5,551,906 - 5,552,355 (+)	Ensembl

RefSeq Acc Id:

XM_003827786 ⟹ XP_003827834

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	18,077,300 - 18,079,428 (+)	NCBI
NHGRI_mPanPan1	10	18,082,644 - 18,084,751 (+)	NCBI
Mhudiblu_PPA_v0	10	5,565,223 - 5,567,471 (+)	NCBI
PanPan1.1	10	5,550,835 - 5,553,087 (+)	NCBI

Sequence:

show sequence

CTGGGGCAATGTGGACCAGAGAATGATAGTGGGACTTCCTGGCTGAGCTCTTCAAGGTCTCCTT
TGTCTCTCCTCCTTGTCCCCTCCCTCACAGGCCTGCAGCCCCACTGATCATCTTCTAGCCCTTG
GCCCTGCCATGGCCACTCCGGCCTAGACAGCTGCTTCTCAGCAGGAGGTCTGTCCTTGACCAGG
CTGAAAGGTGACCTCGGGGTCCTGTCCATCACCACCTTGTATGTCCATCAGCATTTATCAATAA
TCCCTAGTCACCTTGTTTGCATTCCTCGATTAGTTTACCTGCAAACTAGCTGTCTTGCTAGTTA
ACCTCAGAGGACTGGGGGTGGCTTGCCGGTCCCACTGTGTTCCCAGCTTCCAGAGTGACACTGC
ACCTAGTAGGCACTCAAATATCTGTGAAAGGGTGGATGAGTGAATGGGTTGGAGGAAACCCCTC
CCTATTCATGTCCATTCTGAAGATAAGAAAACTCGCTGCTTCTACCTGAAGGGAAAACCTTCCT
CCTCCAAAAACCCTCCTGTTCTATATAAGGCTTTAGAAACCAAAGGCAAGGAAGTTTCTTTCAT
CTGCCTTTCATCCTGCAAAAAGCCCTCCACTCAAGGGAAGAAAGGGCACTGGAGTTTATTGAGT
GGGAGACAGGCGGCAGGTGGGAGACGGGGAGGGAGGAGAGAAAGGGAAATTCAGGAGGAAGGAG
TCCAGCGTGGATTGCTCCAAAGCTCGCCCACCACGCCCTGACTGCAGGTGTGATTCGGGGGCCC
CCGTGGCTCTGCTGGGTCCGGGTGCAAGCAGGCACAGAGGTGCTGGCGTCAGCTCGATTCGCAG
GCCCTGGACTCCTGTCTAAACAGGACAGGCCCGGGCAACCGCAGGGCAGGGGCGTCTGCCAATG
ATGGGGGAGGACTCTGCTGCTTCTTAAGCTCCAGCGTCTCAAGCCAGGGCGAGACAGCCCGCCG
GCCGCCCGGATCTCCACCTGCCACCCCAGAGCTGGGACAGCAGCCGGGCTGCGGCACTGGGAGG
GAGACCCCGCCGTGGCCTCTTCTGCCACCCACGCCCCCACCCCTGGCATGGCCGACCAGCTGAC
TGAGGAGCAGGTCACAGAATTCAAGGAGGCCTTCTCCCTGTTTGACAAGGATGGGGACGGCTGC
ATCACCACCCGCGAGCTGGGCACGGTCATGCGGTCCCTGGGCCAGAACCCCACGGAGGCCGAGC
TGCGGGACATGATGAGTGAGATCGACCGGGACGGCAACGGCACCGTGGACTTCCCCGAGTTCCT
GGGCATGATGGCCAGGAAGATGAAGGACACGGACAACGAGGAGGAGATCCGCGAGGCCTTCCGC
GTGTTCGACAAGGACGGCAACGGCTTCGTCAGCGCCGCCGAGCTGCGACACGTCATGACCCGGC
TGGGGGAGAAGCTGAGTGACGAGGAGGTGGACGAGATGATCCGGGCCGCGGACACGGACGGAGA
CGGACAGGTGAACTACGAGGAGTTTGTCCGTGTGCTGGTGTCCAAGTGAGGCCGGCGCCCACCA
TGCTCCTGGGCGCCCACGCGGCCCACAGGGCAAGAACCCCGGGCCTCCCGCCTCCTCCCCCATC
CCCCTGCCTCCCCTGGGCACTGTGGCTTCCTCCTGCGCCTGGTTGATTCAGCCCACCCCTCTGC
ATCCCGCTTCCCGCATCTCTTCTCTGCTCTCCTGCCGACCTTCCCACCTGCTCATCTGAATGAC
ATGGAACGCTCCCACTCCAGGCAAACCGTGAAGCCCTCCCCACTCGGGAGAAGCAGAGCTGACC
TTAGGACCGAGCACCAGGGCAGGTTGCGCTGACTCTGCGGCCCTCCAGGACGGACACCGGGTGA
CCCCTTAGGGCACCCAGGCAAGATCCCTAACAGGCACCCAATGCCCAGGCCAGGGGGGCTGCAG
CCCTCAGCCCCCGCCAGGATTCCCGGAGGCTCCTGGACTGGAAGCTCCTTCCGCGGTCGGATTC
TGGAGGGTGGGAGGCATCTTGGCCTGCAGTAAGCGGTGCTGACGGGGACTCTGGCCACAGAGGT
CAGGCCTCCTGAAAACGGCACTGCCTTCCACGCTGCCCCAGCTTGCCCCATTCCTTGTCCGCCA
ACCCACCGTGATTCATTTTCTGAAGCTGGGAGTGAAACTGGGTCAGCTGTAACCTGTTCCTATT
CATCTGGAAGGAGGGAGGCTTGGATGAGCGGGGGATGAGAGCTGCAGGGAAATAAATGAGATAT
TCGTCCTTATTTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_003827834	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000006554
	ENSPPAP00000006554.1

RefSeq Acc Id:	XP_003827834 ⟸ XM_003827786
- UniProtKB:	A0A2R8ZUK0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADQLTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTV DFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRA ADTDGDGQVNYEEFVRVLVSK hide sequence

RefSeq Acc Id:

ENSPPAP00000006554 ⟸ ENSPPAT00000027972

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000025299	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000027972.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
KEGG Report	pps:100990795	UniProtKB/TrEMBL
NCBI Gene	CALML3	ENTREZGENE
PANTHER	CALCIUM BINDING PROTEIN	UniProtKB/TrEMBL
	CALMODULIN-LIKE PROTEIN 3	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A2R8ZUK0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD