UNC50 (unc-50 inner nuclear membrane RNA binding protein) - Rat Genome Database

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Gene: UNC50 (unc-50 inner nuclear membrane RNA binding protein) Pan paniscus
Analyze
Symbol: UNC50
Name: unc-50 inner nuclear membrane RNA binding protein
RGD ID: 12020745
Description: ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN protein localization to cell surface (ortholog); ASSOCIATED WITH fetal akinesia deformation sequence syndrome 1 (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (inferred); membrane (inferred); nuclear inner membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein unc-50 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,826,095 - 29,835,997 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,828,976 - 29,838,759 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,693,433 - 100,703,371 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A99,516,848 - 99,526,785 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A99,516,857 - 99,526,785 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
UNC50
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,826,095 - 29,835,997 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,828,976 - 29,838,759 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,693,433 - 100,703,371 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A99,516,848 - 99,526,785 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A99,516,857 - 99,526,785 (+)Ensemblpanpan1.1panPan2
UNC50
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38298,608,589 - 98,618,515 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl298,608,579 - 98,618,515 (+)EnsemblGRCh38hg38GRCh38
GRCh37299,225,052 - 99,234,978 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36298,591,474 - 98,601,410 (+)NCBINCBI36Build 36hg18NCBI36
Build 34298,683,559 - 98,693,493NCBI
Celera293,428,766 - 93,438,703 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef292,989,630 - 92,999,566 (+)NCBIHuRef
CHM1_1299,229,365 - 99,239,301 (+)NCBICHM1_1
T2T-CHM13v2.0299,066,916 - 99,076,837 (+)NCBIT2T-CHM13v2.0
Unc50
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,469,220 - 37,478,068 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,469,220 - 37,478,205 (+)EnsemblGRCm39 Ensembl
GRCm38137,430,139 - 37,438,987 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,430,139 - 37,439,124 (+)EnsemblGRCm38mm10GRCm38
MGSCv37137,487,017 - 37,495,969 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,374,718 - 37,383,670 (+)NCBIMGSCv36mm8
Celera137,212,232 - 37,220,930 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.46NCBI
Unc50
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,160,723 - 47,169,710 (+)NCBIGRCr8
mRatBN7.2939,664,944 - 39,674,369 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,664,971 - 39,672,890 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx948,161,080 - 48,168,954 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,283,830 - 53,291,704 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0951,565,699 - 51,573,573 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0944,024,994 - 44,032,896 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,025,020 - 44,032,888 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0943,726,196 - 43,734,124 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4936,375,661 - 36,383,535 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1936,377,074 - 36,384,946 (+)NCBI
Celera937,419,271 - 37,427,145 (+)NCBICelera
RH 3.4 Map9365.9RGD
Cytogenetic Map9q21NCBI
Unc50
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554705,050,982 - 5,059,890 (+)NCBIChiLan1.0ChiLan1.0
UNC50
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11044,057,617 - 44,073,153 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1044,057,775 - 44,073,074 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1043,980,524 - 43,995,508 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01044,931,041 - 44,946,061 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1044,931,025 - 44,945,866 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,641,462 - 44,656,444 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,932,398 - 44,947,410 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01045,108,149 - 45,123,136 (-)NCBIUU_Cfam_GSD_1.0
Unc50
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,449,010 - 84,457,064 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367441,701,632 - 1,709,826 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367441,701,988 - 1,710,007 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UNC50
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,667,826 - 55,676,978 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1355,667,821 - 55,676,995 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2358,220,278 - 58,229,446 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UNC50
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,322,167 - 2,333,518 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,322,206 - 2,333,495 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041169,842,761 - 169,858,697 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Unc50
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247493,645,869 - 3,655,666 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247493,646,365 - 3,655,666 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000048878   ⟹   ENSPPAP00000026046
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A99,516,857 - 99,526,785 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000048880   ⟹   ENSPPAP00000026048
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A99,517,951 - 99,526,579 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000048881   ⟹   ENSPPAP00000026049
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A99,518,055 - 99,526,563 (+)Ensembl
RefSeq Acc Id: XM_008978795   ⟹   XP_008977043
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21229,826,095 - 29,835,997 (-)NCBI
NHGRI_mPanPan12A29,828,976 - 29,838,759 (-)NCBI
Mhudiblu_PPA_v02A100,693,433 - 100,703,346 (-)NCBI
PanPan1.12A99,516,848 - 99,526,785 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008978800   ⟹   XP_008977048
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21229,826,095 - 29,835,995 (-)NCBI
NHGRI_mPanPan12A29,828,976 - 29,838,757 (-)NCBI
Mhudiblu_PPA_v02A100,693,433 - 100,703,371 (-)NCBI
PanPan1.12A99,516,848 - 99,526,785 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008977043 (Get FASTA)   NCBI Sequence Viewer  
  XP_008977048 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000026046
  ENSPPAP00000026046.1
  ENSPPAP00000026048.1
  ENSPPAP00000026049.1
Reference Protein Sequences
RefSeq Acc Id: XP_008977048   ⟸   XM_008978800
- UniProtKB: A0A2R9BCN4 (UniProtKB/TrEMBL),   A0A2R9B8X3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008977043   ⟸   XM_008978795
- UniProtKB: A0A2R9BCN4 (UniProtKB/TrEMBL),   A0A2R9B8X3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000026046   ⟸   ENSPPAT00000048878
RefSeq Acc Id: ENSPPAP00000026048   ⟸   ENSPPAT00000048880
RefSeq Acc Id: ENSPPAP00000026049   ⟸   ENSPPAT00000048881


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036144 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048878.1 UniProtKB/TrEMBL
  ENSPPAT00000048880.1 UniProtKB/TrEMBL
  ENSPPAT00000048881.1 UniProtKB/TrEMBL
InterPro UNC-50 UniProtKB/TrEMBL
KEGG Report pps:100967357 UniProtKB/TrEMBL
NCBI Gene UNC50 ENTREZGENE
PANTHER PROTEIN UNC-50 HOMOLOG UniProtKB/TrEMBL
  PTHR12841 UniProtKB/TrEMBL
Pfam UNC-50 UniProtKB/TrEMBL
UniProt A0A2R9B8X3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B8X4_PANPA UniProtKB/TrEMBL
  A0A2R9BCN4 ENTREZGENE, UniProtKB/TrEMBL