PNKP (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 20 | 55,976,831 - 55,983,568 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 19 | 57,897,620 - 57,904,351 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 19 | 46,874,216 - 46,880,954 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 19 | 55,790,048 - 55,796,762 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 19 | 55,790,048 - 55,796,762 (-) | Ensembl | panpan1.1 | | panPan2 | |
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PNKP (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 19 | 49,861,204 - 49,867,576 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 19 | 49,859,882 - 49,878,351 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 19 | 50,364,461 - 50,370,833 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 19 | 55,056,273 - 55,062,630 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 19 | 55,056,273 - 55,062,630 | NCBI | | | | | Celera | 19 | 47,233,911 - 47,240,265 (-) | NCBI | | Celera | | | Cytogenetic Map | 19 | q13.33 | NCBI | | | | | HuRef | 19 | 46,740,801 - 46,747,159 (-) | NCBI | | HuRef | | | CHM1_1 | 19 | 50,366,296 - 50,372,658 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 19 | 52,861,341 - 52,867,713 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Pnkp (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 7 | 44,505,903 - 44,514,761 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 7 | 44,506,563 - 44,512,416 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 7 | 44,856,479 - 44,865,337 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 7 | 44,857,139 - 44,862,992 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 7 | 52,112,551 - 52,118,299 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 7 | 44,725,446 - 44,730,692 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 7 | 40,307,378 - 40,313,138 (+) | NCBI | | Celera | | | Cytogenetic Map | 7 | B3 | NCBI | | | | | cM Map | 7 | 28.94 | NCBI | | | | |
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Pnkp (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 1 | 104,476,801 - 104,483,409 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 1 | 95,341,465 - 95,346,921 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 1 | 95,341,620 - 95,346,920 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 1 | 100,727,009 - 100,732,021 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 1 | 109,199,674 - 109,204,686 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 1 | 102,490,083 - 102,495,095 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 1 | 100,853,475 - 100,859,202 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 1 | 100,853,902 - 100,859,084 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 1 | 101,918,355 - 101,923,823 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 1 | 95,330,455 - 95,335,468 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 1 | 95,408,565 - 95,413,578 (+) | NCBI | | | | | Celera | 1 | 89,603,379 - 89,608,363 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | q22 | NCBI | | | | |
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Pnkp (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 | NW_004955559 | 1,064,924 - 1,070,120 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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PNKP (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 1 | 106,695,649 - 106,707,229 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 1 | 106,694,589 - 106,702,150 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 1 | 106,279,042 - 106,290,146 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 1 | 107,217,048 - 107,228,155 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 1 | 107,216,020 - 107,223,660 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 1 | 106,889,136 - 106,900,239 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 1 | 106,531,152 - 106,542,223 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 1 | 107,371,601 - 107,382,705 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Pnkp (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024409349 | 22,030,811 - 22,037,942 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936664 | 3,649,833 - 3,656,035 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936664 | 3,649,020 - 3,656,545 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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PNKP (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 6 | 54,867,637 - 54,881,088 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 6 | 54,870,359 - 54,880,814 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 6 | 50,603,437 - 50,609,911 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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PNKP (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 6 | 43,018,763 - 43,025,506 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 6 | 43,018,807 - 43,025,292 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666073 | 22,994,046 - 23,000,503 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Pnkp (Heterocephalus glaber - naked mole-rat) |
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