NUP210L (nucleoporin 210 like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: NUP210L (nucleoporin 210 like) Pan paniscus
Analyze
Symbol: NUP210L
Name: nucleoporin 210 like
RGD ID: 12020053
Description: INVOLVED IN Sertoli cell development (ortholog); spermatid development (ortholog); ASSOCIATED WITH GAND syndrome (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); nuclear pore (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear pore membrane glycoprotein 210-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,678,392 - 95,839,479 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,413,629 - 95,574,734 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,349,468 - 129,510,688 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,977,742 - 133,125,416 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,977,876 - 133,125,344 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
nuclear pore  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NUP210L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,678,392 - 95,839,479 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,413,629 - 95,574,734 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,349,468 - 129,510,688 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,977,742 - 133,125,416 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,977,876 - 133,125,344 (-)Ensemblpanpan1.1panPan2
NUP210L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,992,690 - 154,155,116 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,992,690 - 154,155,116 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,965,166 - 154,127,592 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,231,790 - 152,394,216 (-)NCBINCBI36Build 36hg18NCBI36
Build 341150,778,233 - 150,925,401NCBI
Celera1127,036,912 - 127,199,334 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1125,327,720 - 125,490,936 (-)NCBIHuRef
CHM1_11155,361,483 - 155,523,936 (-)NCBICHM1_1
T2T-CHM13v2.01153,129,953 - 153,292,344 (-)NCBIT2T-CHM13v2.0
Nup210l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,011,445 - 90,119,458 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,011,439 - 90,119,355 (+)EnsemblGRCm39 Ensembl
GRCm38390,101,007 - 90,212,151 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,104,132 - 90,212,048 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,908,054 - 90,015,939 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,190,094 - 90,297,944 (+)NCBIMGSCv36mm8
Celera390,141,258 - 90,248,934 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.2NCBI
Nup210l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,843,647 - 177,962,975 (+)NCBIGRCr8
mRatBN7.22175,545,999 - 175,665,332 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,547,988 - 175,665,332 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,694,369 - 182,805,138 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,716,758 - 180,827,524 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,317,375 - 175,427,719 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,453,932 - 189,571,918 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,454,340 - 189,571,529 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02208,887,355 - 209,004,828 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,328,293 - 182,450,883 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,278,398 - 182,400,989 (+)NCBI
Celera2169,486,931 - 169,601,257 (+)NCBICelera
Cytogenetic Map2q34NCBI
Nup210l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545601,900 - 714,135 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545601,727 - 714,225 (-)NCBIChiLan1.0ChiLan1.0
NUP210L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,068,259 - 43,149,202 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,068,341 - 43,161,853 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,558,385 - 42,639,551 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,938,572 - 43,019,578 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,938,907 - 43,019,575 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,717,262 - 42,798,244 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,770,568 - 42,851,414 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,054,663 - 43,135,759 (+)NCBIUU_Cfam_GSD_1.0
Nup210l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,711,210 - 24,828,224 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,741,725 - 3,858,563 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,741,428 - 3,858,563 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP210L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,574,108 - 95,698,197 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,573,974 - 95,697,196 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,491,481 - 104,598,654 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUP210L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,671,203 - 9,821,257 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl209,671,482 - 9,815,252 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,029,226 - 9,188,852 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup210l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248853,140,355 - 3,234,360 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034936263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034936269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034936272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034936276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034936278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000027354   ⟹   ENSPPAP00000006288
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1132,977,876 - 133,125,344 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000027358   ⟹   ENSPPAP00000006290
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1132,977,876 - 133,125,344 (-)Ensembl
RefSeq Acc Id: XM_034936263   ⟹   XP_034792154
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,678,397 - 95,839,479 (+)NCBI
NHGRI_mPanPan1195,413,634 - 95,574,734 (+)NCBI
Mhudiblu_PPA_v01129,349,603 - 129,510,688 (-)NCBI
RefSeq Acc Id: XM_034936272   ⟹   XP_034792163
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,678,405 - 95,839,479 (+)NCBI
NHGRI_mPanPan1195,413,642 - 95,574,734 (+)NCBI
Mhudiblu_PPA_v01129,349,468 - 129,510,616 (-)NCBI
RefSeq Acc Id: XM_034936276   ⟹   XP_034792167
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,678,392 - 95,839,479 (+)NCBI
NHGRI_mPanPan1195,413,629 - 95,574,734 (+)NCBI
Mhudiblu_PPA_v01129,349,603 - 129,510,688 (-)NCBI
RefSeq Acc Id: XM_055113455   ⟹   XP_054969430
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,678,398 - 95,839,479 (+)NCBI
NHGRI_mPanPan1195,413,635 - 95,574,734 (+)NCBI
RefSeq Acc Id: XM_055113456   ⟹   XP_054969431
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,678,398 - 95,839,479 (+)NCBI
NHGRI_mPanPan1195,413,635 - 95,574,734 (+)NCBI
RefSeq Acc Id: XM_055113458   ⟹   XP_054969433
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,678,892 - 95,839,479 (+)NCBI
NHGRI_mPanPan1195,414,129 - 95,574,734 (+)NCBI
RefSeq Acc Id: XM_055113464   ⟹   XP_054969439
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,678,441 - 95,839,479 (+)NCBI
NHGRI_mPanPan1195,413,678 - 95,574,734 (+)NCBI
RefSeq Acc Id: XM_055113468   ⟹   XP_054969443
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,678,892 - 95,839,479 (+)NCBI
NHGRI_mPanPan1195,414,129 - 95,574,734 (+)NCBI
RefSeq Acc Id: XM_055113469   ⟹   XP_054969444
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,678,405 - 95,839,479 (+)NCBI
NHGRI_mPanPan1195,413,642 - 95,574,734 (+)NCBI
RefSeq Acc Id: XM_055113476   ⟹   XP_054969451
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,678,892 - 95,839,479 (+)NCBI
NHGRI_mPanPan1195,414,129 - 95,574,734 (+)NCBI
RefSeq Acc Id: XM_055113477   ⟹   XP_054969452
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,678,405 - 95,839,479 (+)NCBI
NHGRI_mPanPan1195,413,642 - 95,574,734 (+)NCBI
RefSeq Acc Id: XM_055113478   ⟹   XP_054969453
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,678,405 - 95,831,321 (+)NCBI
NHGRI_mPanPan1195,413,642 - 95,566,573 (+)NCBI
RefSeq Acc Id: XM_055113480   ⟹   XP_054969455
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,678,405 - 95,831,321 (+)NCBI
NHGRI_mPanPan1195,413,642 - 95,566,573 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034792163   ⟸   XM_034936272
- Peptide Label: isoform X5
- UniProtKB: A0A2R8ZMW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034792167   ⟸   XM_034936276
- Peptide Label: isoform X9
- UniProtKB: A0A2R8ZP29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034792154   ⟸   XM_034936263
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZMW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000006290   ⟸   ENSPPAT00000027358
RefSeq Acc Id: ENSPPAP00000006288   ⟸   ENSPPAT00000027354
RefSeq Acc Id: XP_054969430   ⟸   XM_055113455
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZMW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054969431   ⟸   XM_055113456
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZMW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054969444   ⟸   XM_055113469
- Peptide Label: isoform X8
- UniProtKB: A0A2R8ZP29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054969452   ⟸   XM_055113477
- Peptide Label: isoform X11
- UniProtKB: A0A2R8ZP29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054969453   ⟸   XM_055113478
- Peptide Label: isoform X12
- UniProtKB: A0A2R8ZP29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054969455   ⟸   XM_055113480
- Peptide Label: isoform X13
- UniProtKB: A0A2R8ZP29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054969439   ⟸   XM_055113464
- Peptide Label: isoform X6
- UniProtKB: A0A2R8ZMW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054969433   ⟸   XM_055113458
- Peptide Label: isoform X4
- UniProtKB: A0A2R8ZMW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054969451   ⟸   XM_055113476
- Peptide Label: isoform X10
- UniProtKB: A0A2R8ZP29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054969443   ⟸   XM_055113468
- Peptide Label: isoform X7
- UniProtKB: A0A2R8ZMW4 (UniProtKB/TrEMBL)
Protein Domains
BIG2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000024740 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000027354.1 UniProtKB/TrEMBL
  ENSPPAT00000027358.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1080 UniProtKB/TrEMBL
InterPro Big_2 UniProtKB/TrEMBL
  Invasin/intimin_cell_adhesion UniProtKB/TrEMBL
  NUP210-like UniProtKB/TrEMBL
NCBI Gene NUP210L ENTREZGENE
PANTHER NUCLEAR PORE MEMBRANE GLYCOPROTEIN 210-LIKE UniProtKB/TrEMBL
  PTHR23019 UniProtKB/TrEMBL
Pfam Big_2 UniProtKB/TrEMBL
SMART BID_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF49373 UniProtKB/TrEMBL
UniProt A0A2R8ZMW4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZP29 ENTREZGENE, UniProtKB/TrEMBL