PROM2 (prominin 2) - Rat Genome Database

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Gene: PROM2 (prominin 2) Pan paniscus
Analyze
Symbol: PROM2
Name: prominin 2
RGD ID: 12019502
Description: ENCODES a protein that exhibits cholesterol binding (inferred); INVOLVED IN negative regulation of caveolin-mediated endocytosis (ortholog); negative regulation of pinocytosis (ortholog); positive regulation of cell projection organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cell projection (ortholog); cytoplasmic vesicle (ortholog); membrane raft (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: prominin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21233,000,900 - 33,034,392 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A33,007,160 - 33,034,513 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A104,117,086 - 104,138,298 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A96,177,524 - 96,194,382 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PROM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21233,000,900 - 33,034,392 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A33,007,160 - 33,034,513 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A104,117,086 - 104,138,298 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A96,177,524 - 96,194,382 (+)NCBIpanpan1.1PanPan1.1panPan2
PROM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38295,274,449 - 95,291,302 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl295,274,449 - 95,291,308 (+)EnsemblGRCh38hg38GRCh38
GRCh37295,940,197 - 95,957,050 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36295,303,928 - 95,320,781 (+)NCBINCBI36Build 36hg18NCBI36
Build 34295,362,074 - 95,378,928NCBI
Celera290,293,346 - 90,310,195 (+)NCBICelera
Cytogenetic Map2q11.1NCBI
HuRef289,967,276 - 89,984,207 (+)NCBIHuRef
CHM1_1295,944,554 - 95,961,410 (+)NCBICHM1_1
T2T-CHM13v2.0295,780,925 - 95,797,779 (+)NCBIT2T-CHM13v2.0
Prom2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392127,368,873 - 127,383,337 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2127,368,393 - 127,383,387 (-)EnsemblGRCm39 Ensembl
GRCm382127,526,953 - 127,541,417 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2127,526,473 - 127,541,467 (-)EnsemblGRCm38mm10GRCm38
MGSCv372127,352,689 - 127,367,153 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362127,217,914 - 127,232,908 (-)NCBIMGSCv36mm8
Celera2128,771,840 - 128,786,259 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map262.04NCBI
Prom2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83135,200,944 - 135,215,130 (-)NCBIGRCr8
mRatBN7.23114,747,654 - 114,761,787 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3114,747,654 - 114,761,787 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3118,636,941 - 118,651,057 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03127,232,493 - 127,246,609 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03124,892,871 - 124,906,989 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03120,087,633 - 120,107,495 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3120,092,582 - 120,106,697 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03127,225,616 - 127,239,978 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43115,030,864 - 115,044,987 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13114,936,437 - 114,950,560 (-)NCBI
Celera3113,584,551 - 113,598,660 (-)NCBICelera
Cytogenetic Map3q36NCBI
Prom2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,524,805 - 3,538,935 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554703,524,900 - 3,538,882 (+)NCBIChiLan1.0ChiLan1.0
PROM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11734,814,260 - 34,827,833 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1734,815,735 - 34,827,740 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1734,583,025 - 34,596,585 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01735,585,103 - 35,598,677 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1735,586,665 - 35,599,267 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11734,713,897 - 34,727,445 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01734,782,431 - 34,795,991 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,991,754 - 35,005,323 (-)NCBIUU_Cfam_GSD_1.0
Prom2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629282,819,249 - 82,832,968 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493674473,004 - 85,911 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PROM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl346,003,238 - 46,023,405 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1346,001,949 - 46,025,425 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2348,368,831 - 48,381,710 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PROM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114305,442 - 323,187 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14306,515 - 323,909 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041167,709,896 - 167,727,720 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prom2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247492,036,280 - 2,049,909 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247492,036,335 - 2,049,434 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_055107685   ⟹   XP_054963660
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21233,000,900 - 33,034,392 (-)NCBI
NHGRI_mPanPan12A33,007,160 - 33,034,513 (-)NCBI
Protein Sequences
Protein RefSeqs XP_054963660 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000002074.1
Reference Protein Sequences
RefSeq Acc Id: XP_054963660   ⟸   XM_055107685


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000009439 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000010202.1 UniProtKB/TrEMBL
InterPro Prominin UniProtKB/TrEMBL
NCBI Gene PROM2 ENTREZGENE
PANTHER PROMININ-2 UniProtKB/TrEMBL
  PTHR22730 UniProtKB/TrEMBL
Pfam Prominin UniProtKB/TrEMBL
UniProt A0A2R8ZB49_PANPA UniProtKB/TrEMBL