PLXNB2 (plexin B2) - Rat Genome Database

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Gene: PLXNB2 (plexin B2) Pan paniscus
Analyze
Symbol: PLXNB2
Name: plexin B2
RGD ID: 12016479
Description: ENCODES a protein that exhibits semaphorin receptor activity (inferred); INVOLVED IN positive regulation of axonogenesis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred); semaphorin receptor complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: plexin-B2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,181,070 - 60,214,257 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12262,867,226 - 62,900,419 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,503,884 - 30,537,082 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,502,117 - 49,527,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,502,489 - 49,517,613 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PLXNB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,181,070 - 60,214,257 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12262,867,226 - 62,900,419 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,503,884 - 30,537,082 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,502,117 - 49,527,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,502,489 - 49,517,613 (-)Ensemblpanpan1.1panPan2
PLXNB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,274,979 - 50,307,646 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,274,979 - 50,307,646 (-)EnsemblGRCh38hg38GRCh38
GRCh372250,713,408 - 50,746,075 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,055,535 - 49,086,830 (-)NCBINCBI36Build 36hg18NCBI36
Celera2234,588,312 - 34,609,097 (-)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,610,818 - 33,631,643 (-)NCBIHuRef
CHM1_12250,672,148 - 50,704,747 (-)NCBICHM1_1
T2T-CHM13v2.02250,781,981 - 50,815,405 (-)NCBIT2T-CHM13v2.0
Plxnb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,039,752 - 89,064,960 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,039,752 - 89,064,991 (-)EnsemblGRCm39 Ensembl
GRCm381589,155,546 - 89,182,018 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,155,549 - 89,180,788 (-)EnsemblGRCm38mm10GRCm38
MGSCv371588,985,979 - 89,011,218 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361588,983,312 - 89,008,554 (-)NCBIMGSCv36mm8
Celera1591,284,651 - 91,309,986 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.68NCBI
Plxnb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,111,917 - 122,138,201 (-)NCBIGRCr8
mRatBN7.27120,232,276 - 120,258,385 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,232,331 - 120,258,330 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7121,983,321 - 122,009,319 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,209,484 - 124,235,482 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,172,490 - 124,198,498 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,135,484 - 130,161,568 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,135,464 - 130,151,880 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07129,821,099 - 129,847,380 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,457,133 - 127,483,162 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,492,148 - 127,508,267 (-)NCBI
Celera7116,706,163 - 116,732,180 (-)NCBICelera
Cytogenetic Map7q34NCBI
Plxnb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,298,317 - 33,309,961 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541333,297,617 - 33,314,371 (-)NCBIChiLan1.0ChiLan1.0
PLXNB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,949,230 - 16,975,109 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1016,963,396 - 16,974,705 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1016,928,363 - 16,953,552 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,677,119 - 17,702,321 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1017,677,067 - 17,702,319 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,401,245 - 17,426,434 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,724,556 - 17,749,721 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,856,713 - 17,881,895 (+)NCBIUU_Cfam_GSD_1.0
Plxnb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945522,686 - 539,474 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629525,649 - 538,743 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629521,981 - 539,475 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLXNB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5403,765 - 416,798 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15390,347 - 416,805 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PLXNB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,764,329 - 32,797,223 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1932,764,272 - 32,784,566 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604592,557,436 - 92,590,397 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plxnb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752469,973 - 498,729 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752473,451 - 498,555 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034949307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034949308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034949309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034949310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034949311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034949312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034949313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055105503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057300985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063603183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000062433   ⟹   ENSPPAP00000039522
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2249,502,489 - 49,517,613 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062559   ⟹   ENSPPAP00000039648
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2249,502,846 - 49,517,613 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062564   ⟹   ENSPPAP00000039653
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2249,502,846 - 49,517,613 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062566   ⟹   ENSPPAP00000039655
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2249,502,846 - 49,517,613 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062584   ⟹   ENSPPAP00000039672
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2249,504,877 - 49,507,903 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062592   ⟹   ENSPPAP00000039680
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2249,504,958 - 49,505,898 (-)Ensembl
RefSeq Acc Id: XM_034949307   ⟹   XP_034805198
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,214,257 (-)NCBI
NHGRI_mPanPan12262,867,226 - 62,900,405 (-)NCBI
Mhudiblu_PPA_v02230,503,890 - 30,537,067 (-)NCBI
RefSeq Acc Id: XM_034949308   ⟹   XP_034805199
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,214,214 (-)NCBI
NHGRI_mPanPan12262,867,226 - 62,900,389 (-)NCBI
Mhudiblu_PPA_v02230,503,884 - 30,537,050 (-)NCBI
RefSeq Acc Id: XM_034949310   ⟹   XP_034805201
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,206,924 (-)NCBI
NHGRI_mPanPan12262,867,226 - 62,893,123 (-)NCBI
Mhudiblu_PPA_v02230,503,890 - 30,529,652 (-)NCBI
RefSeq Acc Id: XM_034949311   ⟹   XP_034805202
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,214,254 (-)NCBI
NHGRI_mPanPan12262,867,226 - 62,900,419 (-)NCBI
Mhudiblu_PPA_v02230,503,890 - 30,537,082 (-)NCBI
RefSeq Acc Id: XM_034949312   ⟹   XP_034805203
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,206,890 (-)NCBI
NHGRI_mPanPan12262,867,226 - 62,893,124 (-)NCBI
Mhudiblu_PPA_v02230,503,890 - 30,529,640 (-)NCBI
RefSeq Acc Id: XM_055105503   ⟹   XP_054961478
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,202,786 (-)NCBI
NHGRI_mPanPan12262,867,226 - 62,888,953 (-)NCBI
RefSeq Acc Id: XM_057300985   ⟹   XP_057156968
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,201,099 (-)NCBI
NHGRI_mPanPan12262,867,226 - 62,887,256 (-)NCBI
RefSeq Acc Id: XM_063603176   ⟹   XP_063459246
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,214,257 (-)NCBI
RefSeq Acc Id: XM_063603177   ⟹   XP_063459247
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,214,209 (-)NCBI
RefSeq Acc Id: XM_063603178   ⟹   XP_063459248
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,211,542 (-)NCBI
RefSeq Acc Id: XM_063603179   ⟹   XP_063459249
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,214,254 (-)NCBI
RefSeq Acc Id: XM_063603180   ⟹   XP_063459250
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,206,924 (-)NCBI
RefSeq Acc Id: XM_063603181   ⟹   XP_063459251
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,203,202 (-)NCBI
RefSeq Acc Id: XM_063603182   ⟹   XP_063459252
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,206,890 (-)NCBI
RefSeq Acc Id: XM_063603183   ⟹   XP_063459253
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22360,181,070 - 60,203,194 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034805199   ⟸   XM_034949308
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CF63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034805202   ⟸   XM_034949311
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CF63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034805198   ⟸   XM_034949307
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CF63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034805201   ⟸   XM_034949310
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CF63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034805203   ⟸   XM_034949312
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CF63 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000039680   ⟸   ENSPPAT00000062592
RefSeq Acc Id: ENSPPAP00000039672   ⟸   ENSPPAT00000062584
RefSeq Acc Id: ENSPPAP00000039648   ⟸   ENSPPAT00000062559
RefSeq Acc Id: ENSPPAP00000039655   ⟸   ENSPPAT00000062566
RefSeq Acc Id: ENSPPAP00000039653   ⟸   ENSPPAT00000062564
RefSeq Acc Id: ENSPPAP00000039522   ⟸   ENSPPAT00000062433
RefSeq Acc Id: XP_054961478   ⟸   XM_055105503
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CF63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057156968   ⟸   XM_057300985
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CF63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063459246   ⟸   XM_063603176
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063459249   ⟸   XM_063603179
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063459247   ⟸   XM_063603177
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063459248   ⟸   XM_063603178
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063459250   ⟸   XM_063603180
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063459252   ⟸   XM_063603182
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063459251   ⟸   XM_063603181
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063459253   ⟸   XM_063603183
- Peptide Label: isoform X2
Protein Domains
Plexin cytoplasmic RasGAP   Plexin cytoplasmic RhoGTPase-binding   Sema


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042446 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062433.1 UniProtKB/TrEMBL
  ENSPPAT00000062559.1 UniProtKB/TrEMBL
  ENSPPAT00000062564.1 UniProtKB/TrEMBL
  ENSPPAT00000062566.1 UniProtKB/TrEMBL
  ENSPPAT00000062584.1 UniProtKB/TrEMBL
  ENSPPAT00000062592.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  IPT_dom UniProtKB/TrEMBL
  Plexin UniProtKB/TrEMBL
  Plexin_cytoplasmic_RasGAP_dom UniProtKB/TrEMBL
  Plexin_RBD UniProtKB/TrEMBL
  Plexin_repeat UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  Semap_dom UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/TrEMBL
  TIG1_plexin UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
NCBI Gene PLXNB2 ENTREZGENE
PANTHER PLEXIN-B2 UniProtKB/TrEMBL
  PTHR22625 UniProtKB/TrEMBL
Pfam Plexin_cytopl UniProtKB/TrEMBL
  Plexin_RBD UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
  TIG UniProtKB/TrEMBL
  TIG_plexin UniProtKB/TrEMBL
PROSITE SEMA UniProtKB/TrEMBL
SMART IPT UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
Superfamily-SCOP Plexin repeat UniProtKB/TrEMBL
  SSF101912 UniProtKB/TrEMBL
  SSF48350 UniProtKB/TrEMBL
  SSF81296 UniProtKB/TrEMBL
UniProt A0A2R9CCI9_PANPA UniProtKB/TrEMBL
  A0A2R9CCL6_PANPA UniProtKB/TrEMBL
  A0A2R9CF57_PANPA UniProtKB/TrEMBL
  A0A2R9CF63 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CMY5_PANPA UniProtKB/TrEMBL
  A0A2R9CN81_PANPA UniProtKB/TrEMBL