PXDNL (peroxidasin like) - Rat Genome Database

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Gene: PXDNL (peroxidasin like) Pan paniscus
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Symbol: PXDNL
Name: peroxidasin like
RGD ID: 12015209
Description: ENCODES a protein that exhibits heme binding (inferred); lactoperoxidase activity (inferred); metal ion binding (inferred); INVOLVED IN cellular oxidant detoxification (inferred); response to oxidative stress (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peroxidasin homolog (Drosophila)-like; peroxidasin-like protein-like; probable oxidoreductase PXDNL
RGD Orthologs
Human
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2766,959,536 - 67,308,453 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1842,686,264 - 43,033,305 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0847,748,682 - 48,230,125 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1845,132,928 - 45,366,150 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl845,133,241 - 45,612,879 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PXDNL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2766,959,536 - 67,308,453 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1842,686,264 - 43,033,305 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0847,748,682 - 48,230,125 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1845,132,928 - 45,366,150 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl845,133,241 - 45,612,879 (-)Ensemblpanpan1.1panPan2
PXDNL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38851,319,577 - 51,809,445 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl851,319,577 - 51,809,445 (-)EnsemblGRCh38hg38GRCh38
GRCh37852,232,137 - 52,722,005 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36852,394,690 - 52,884,558 (-)NCBINCBI36Build 36hg18NCBI36
Celera848,220,418 - 48,712,670 (-)NCBICelera
Cytogenetic Map8q11.22-q11.23NCBI
HuRef847,697,990 - 48,190,496 (-)NCBIHuRef
CHM1_1852,284,406 - 52,774,456 (-)NCBICHM1_1
T2T-CHM13v2.0851,692,630 - 52,185,430 (-)NCBIT2T-CHM13v2.0
Pxdnl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545410,993,294 - 11,442,351 (-)NCBIChiLan1.0ChiLan1.0
PXDNL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1293,277,291 - 3,706,964 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl293,278,787 - 3,707,064 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha293,720,453 - 4,149,319 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0293,344,508 - 3,776,918 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl293,345,706 - 3,777,286 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1293,276,724 - 3,706,022 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0293,499,904 - 3,930,686 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0293,573,666 - 4,005,696 (-)NCBIUU_Cfam_GSD_1.0
Pxdnl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530375,869,121 - 76,306,548 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365901,059,538 - 1,496,199 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PXDNL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1847,379,170 - 47,923,148 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl847,416,979 - 47,598,365 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603994,319,362 - 94,618,726 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pxdnl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247353,995,872 - 4,207,179 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_024929820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000045730   ⟹   ENSPPAP00000022915
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl845,133,241 - 45,612,879 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000045743   ⟹   ENSPPAP00000022927
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl845,133,241 - 45,456,691 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000045746   ⟹   ENSPPAP00000022930
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl845,133,241 - 45,221,282 (-)Ensembl
RefSeq Acc Id: XM_024929820   ⟹   XP_024785588
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2766,959,536 - 67,308,453 (-)NCBI
NHGRI_mPanPan1842,686,264 - 43,033,305 (-)NCBI
Mhudiblu_PPA_v0847,748,682 - 48,230,125 (-)NCBI
PanPan1.1845,132,928 - 45,366,150 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_024785588 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000022915.1
  ENSPPAP00000022927.1
  ENSPPAP00000022930.1
RefSeq Acc Id: XP_024785588   ⟸   XM_024929820
- Sequence:
RefSeq Acc Id: ENSPPAP00000022915   ⟸   ENSPPAT00000045730
RefSeq Acc Id: ENSPPAP00000022930   ⟸   ENSPPAT00000045746
RefSeq Acc Id: ENSPPAP00000022927   ⟸   ENSPPAT00000045743
Protein Domains
Ig-like   VWFC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034627 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045730.1 UniProtKB/TrEMBL
  ENSPPAT00000045743.1 UniProtKB/TrEMBL
  ENSPPAT00000045746.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.640.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
  6.20.200.20 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Haem_peroxidase_animal UniProtKB/TrEMBL
  Haem_peroxidase_sf UniProtKB/TrEMBL
  Haem_peroxidase_sf_animal UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  Peroxidasin_peroxidase UniProtKB/TrEMBL
  VWF_dom UniProtKB/TrEMBL
NCBI Gene PXDNL ENTREZGENE
PANTHER OXIDASE/PEROXIDASE UniProtKB/TrEMBL
  PTHR11475:SF38 UniProtKB/TrEMBL
Pfam An_peroxidase UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
  LRR_1 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
  VWC UniProtKB/TrEMBL
PRINTS ANPEROXIDASE UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
  PEROXIDASE_3 UniProtKB/TrEMBL
  VWFC_1 UniProtKB/TrEMBL
  VWFC_2 UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
  VWC UniProtKB/TrEMBL
Superfamily-SCOP FnI-like domain UniProtKB/TrEMBL
  L domain-like UniProtKB/TrEMBL
  SSF48113 UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A2R9AZZ4_PANPA UniProtKB/TrEMBL
  A0A2R9B009_PANPA UniProtKB/TrEMBL
  A0A2R9B6I1_PANPA UniProtKB/TrEMBL