ZNF546 (zinc finger protein 546) - Rat Genome Database

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Gene: ZNF546 (zinc finger protein 546) Pan paniscus
Analyze
Symbol: ZNF546
Name: zinc finger protein 546
RGD ID: 12013962
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22046,243,195 - 46,282,806 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11948,113,855 - 48,153,471 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01937,043,584 - 37,063,413 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11945,558,853 - 45,578,642 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1945,568,547 - 45,578,318 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ZNF546
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22046,243,195 - 46,282,806 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11948,113,855 - 48,153,471 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01937,043,584 - 37,063,413 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11945,558,853 - 45,578,642 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1945,568,547 - 45,578,318 (+)Ensemblpanpan1.1panPan2
ZNF546
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381939,997,060 - 40,021,038 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1939,984,134 - 40,021,038 (+)EnsemblGRCh38hg38GRCh38
GRCh371940,502,967 - 40,526,945 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361945,194,869 - 45,215,354 (+)NCBINCBI36Build 36hg18NCBI36
Build 341945,194,868 - 45,215,354NCBI
Celera1937,301,314 - 37,321,882 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1936,939,407 - 36,959,978 (+)NCBIHuRef
CHM1_11940,502,986 - 40,523,557 (+)NCBICHM1_1
T2T-CHM13v2.01942,817,266 - 42,841,244 (+)NCBIT2T-CHM13v2.0
Zfp11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,731,659 - 129,747,152 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5129,731,657 - 129,747,163 (-)EnsemblGRCm39 Ensembl
GRCm385129,654,595 - 129,670,088 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,654,593 - 129,670,099 (-)EnsemblGRCm38mm10GRCm38
MGSCv375130,160,470 - 130,175,963 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365129,969,303 - 129,984,781 (-)NCBIMGSCv36mm8
Celera5126,697,643 - 126,713,037 (-)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.22NCBI
Zfp11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,664,312 - 32,676,940 (+)NCBIGRCr8
mRatBN7.21227,028,067 - 27,040,846 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1227,028,115 - 27,041,365 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01230,655,245 - 30,668,370 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,655,898 - 30,668,370 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,590,339 - 32,603,366 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41228,099,961 - 28,108,769 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1228,731,570 - 28,744,739 (+)NCBICelera
Cytogenetic Map12q13NCBI
Znf546
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934914,116,885 - 14,136,626 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366612,544,960 - 2,567,691 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366612,545,011 - 2,564,695 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF546
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,418,783 - 48,432,494 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,418,717 - 48,432,498 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,195,587 - 44,201,495 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF546
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1634,509,536 - 34,529,534 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607312,601,511 - 12,621,991 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000050907   ⟹   ENSPPAP00000028063
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1945,568,547 - 45,578,318 (+)Ensembl
RefSeq Acc Id: XM_008964949   ⟹   XP_008963197
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22046,243,195 - 46,282,806 (+)NCBI
NHGRI_mPanPan11948,113,855 - 48,153,471 (+)NCBI
Mhudiblu_PPA_v01937,043,584 - 37,063,413 (+)NCBI
PanPan1.11945,558,853 - 45,578,642 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034944278   ⟹   XP_034800169
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22046,243,195 - 46,282,806 (+)NCBI
NHGRI_mPanPan11948,113,855 - 48,153,471 (+)NCBI
Mhudiblu_PPA_v01937,043,584 - 37,063,413 (+)NCBI
RefSeq Acc Id: XM_034944280   ⟹   XP_034800171
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22046,243,195 - 46,282,806 (+)NCBI
NHGRI_mPanPan11948,113,855 - 48,153,471 (+)NCBI
Mhudiblu_PPA_v01937,043,584 - 37,063,413 (+)NCBI
RefSeq Acc Id: XM_055103618   ⟹   XP_054959593
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22046,258,734 - 46,282,806 (+)NCBI
NHGRI_mPanPan11948,129,373 - 48,153,471 (+)NCBI
RefSeq Acc Id: XM_055103620   ⟹   XP_054959595
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22046,243,195 - 46,282,806 (+)NCBI
NHGRI_mPanPan11948,113,855 - 48,153,471 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008963197 (Get FASTA)   NCBI Sequence Viewer  
  XP_034800169 (Get FASTA)   NCBI Sequence Viewer  
  XP_034800171 (Get FASTA)   NCBI Sequence Viewer  
  XP_054959593 (Get FASTA)   NCBI Sequence Viewer  
  XP_054959595 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000028063.1
Reference Protein Sequences
RefSeq Acc Id: XP_008963197   ⟸   XM_008964949
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_034800169   ⟸   XM_034944278
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034800171   ⟸   XM_034944280
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000028063   ⟸   ENSPPAT00000050907
RefSeq Acc Id: XP_054959595   ⟸   XM_055103620
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054959593   ⟸   XM_055103618
- Peptide Label: isoform X1
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037087 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000050907.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF546 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN 5-RELATED UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9BFS7_PANPA UniProtKB/TrEMBL