PAX6 (paired box 6) - Rat Genome Database

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Gene: PAX6 (paired box 6) Pan paniscus
Analyze
Symbol: PAX6
Name: paired box 6
RGD ID: 12013741
Description: ENCODES a protein that exhibits double-stranded DNA binding (ortholog); minor groove of adenine-thymine-rich DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); astrocyte differentiation (ortholog); axon guidance (ortholog); ASSOCIATED WITH aniridia (ortholog); aniridia 1 (ortholog); Anophthalmia (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: paired box protein Pax-6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2933,999,843 - 34,029,009 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11134,004,314 - 34,033,443 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,753,190 - 31,782,225 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11131,641,813 - 31,671,071 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1131,641,813 - 31,664,474 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anterior/posterior pattern specification  (IEA,ISO)
astrocyte differentiation  (IEA,ISO)
axon guidance  (IEA,ISO)
axonogenesis  (IEA,ISO)
blood vessel development  (ISO)
brain development  (IEA,ISO)
camera-type eye development  (IEA,ISO)
cell differentiation  (IEA,ISO)
cell fate commitment  (IEA,ISO)
cell fate determination  (IEA,ISO)
cell population proliferation  (IEA,ISO)
cellular response to fibroblast growth factor stimulus  (ISO)
cellular response to glucose stimulus  (ISO)
cellular response to insulin stimulus  (ISO)
cellular response to leukemia inhibitory factor  (IEA,ISO)
cellular response to prostaglandin E stimulus  (ISO)
cellular response to xenobiotic stimulus  (ISO)
cerebellum development  (ISO)
cerebral cortex development  (IEA)
cerebral cortex regionalization  (IEA,ISO)
chromatin remodeling  (IEA)
commitment of neuronal cell to specific neuron type in forebrain  (IEA,ISO)
cornea development in camera-type eye  (ISO)
dorsal/ventral axis specification  (IEA,ISO)
dorsal/ventral pattern formation  (IEA,ISO)
embryonic camera-type eye morphogenesis  (IEA,ISO)
epithelial cell development  (ISO)
establishment of mitotic spindle orientation  (IEA,ISO)
eye photoreceptor cell development  (IEA,ISO)
forebrain development  (IEA,ISO)
forebrain dorsal/ventral pattern formation  (IEA,ISO)
forebrain-midbrain boundary formation  (IEA,ISO)
gene expression  (IEA,ISO)
glandular epithelial cell differentiation  (IEA,ISO)
glucose homeostasis  (ISO)
habenula development  (IEA,ISO)
hindbrain development  (ISO)
insulin metabolic process  (ISO)
interkinetic nuclear migration  (ISO)
iris morphogenesis  (ISO)
keratinocyte differentiation  (IEA,ISO)
lacrimal gland development  (IEA,ISO)
learned vocalization behavior or vocal learning  (ISO)
lens development in camera-type eye  (IEA,ISO)
negative regulation of epithelial cell proliferation  (IEA,ISO)
negative regulation of neural precursor cell proliferation  (IEA,ISO)
negative regulation of neuroblast proliferation  (IEA,ISO)
negative regulation of neuron differentiation  (IEA,ISO)
negative regulation of protein phosphorylation  (ISO)
negative regulation of transcription by RNA polymerase II  (IEA)
nervous system development  (IEA)
neural crest cell migration  (ISO)
neural precursor cell proliferation  (IEA,ISO)
neuroblast proliferation  (IEA,ISO)
neuron differentiation  (IEA,ISO)
neuron migration  (IEA,ISO)
olfactory bulb development  (ISO)
olfactory bulb mitral cell layer development  (ISO)
oligodendrocyte cell fate specification  (IEA,ISO)
pallium development  (IEA,ISO)
pancreatic A cell development  (IEA)
pancreatic A cell differentiation  (ISO)
pituitary gland development  (IEA,ISO)
positive regulation of cell fate specification  (ISO)
positive regulation of DNA-templated transcription  (IEA)
positive regulation of epithelial cell differentiation  (IEA,ISO)
positive regulation of gene expression  (IEA,ISO)
positive regulation of glutamatergic neuron differentiation  (ISO)
positive regulation of miRNA transcription  (ISO)
positive regulation of neuroblast proliferation  (IEA,ISO)
positive regulation of neuron migration  (ISO)
positive regulation of response to biotic stimulus  (ISO)
positive regulation of transcription by RNA polymerase II  (IEA,ISO)
protein localization to organelle  (IEA,ISO)
protein phosphorylation  (ISO)
regionalization  (IEA,ISO)
regulation of asymmetric cell division  (IEA,ISO)
regulation of cell migration  (IEA,ISO)
regulation of DNA-templated transcription  (IEA)
regulation of gene expression  (IEA,ISO)
regulation of neurogenesis  (IEA,ISO)
regulation of neuron differentiation  (IEA,ISO)
regulation of neuron projection development  (ISO)
regulation of timing of cell differentiation  (IEA,ISO)
regulation of transcription by RNA polymerase II  (IEA,ISO)
response to ethanol  (ISO)
response to wounding  (ISO)
retina development in camera-type eye  (IEA,ISO)
rhombomere morphogenesis  (ISO)
salivary gland morphogenesis  (IEA,ISO)
sensory neuron migration  (ISO)
signal transduction involved in regulation of gene expression  (IEA,ISO)
smoothened signaling pathway  (IEA,ISO)
spinal cord development  (ISO)
telencephalon regionalization  (IEA,ISO)
transcription by RNA polymerase II  (IEA,ISO)
type B pancreatic cell differentiation  (IEA,ISO)
ventral spinal cord development  (IEA)

Cellular Component
chromatin  (IEA,ISO)
cytoplasm  (ISO)
cytosol  (ISO)
membrane  (IEA)
nucleoplasm  (ISO)
nucleus  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PAX6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2933,999,843 - 34,029,009 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11134,004,314 - 34,033,443 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,753,190 - 31,782,225 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11131,641,813 - 31,671,071 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1131,641,813 - 31,664,474 (-)Ensemblpanpan1.1panPan2
PAX6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381131,789,026 - 31,817,961 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1131,784,779 - 31,817,961 (-)EnsemblGRCh38hg38GRCh38
GRCh371131,810,574 - 31,839,509 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361131,767,034 - 31,789,455 (-)NCBINCBI36Build 36hg18NCBI36
Build 341131,768,057 - 31,789,341NCBI
Celera1131,953,799 - 31,986,960 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1131,501,758 - 31,535,259 (-)NCBIHuRef
CHM1_11131,805,847 - 31,839,030 (-)NCBICHM1_1
T2T-CHM13v2.01131,924,847 - 31,953,767 (-)NCBIT2T-CHM13v2.0
Pax6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392105,499,241 - 105,528,755 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2105,499,245 - 105,527,709 (+)EnsemblGRCm39 Ensembl
GRCm382105,668,896 - 105,698,410 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2105,668,900 - 105,697,364 (+)EnsemblGRCm38mm10GRCm38
MGSCv372105,516,602 - 105,537,226 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362105,477,284 - 105,497,908 (+)NCBIMGSCv36mm8
Celera2106,897,827 - 106,918,452 (+)NCBICelera
Cytogenetic Map2E3NCBI
cM Map255.31NCBI
Pax6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83112,590,034 - 112,611,771 (+)NCBIGRCr8
mRatBN7.2392,128,772 - 92,157,022 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl392,135,637 - 92,157,014 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx395,631,693 - 95,652,650 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03104,230,622 - 104,251,579 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03102,058,594 - 102,079,600 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0395,700,241 - 95,728,682 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl395,707,386 - 95,728,624 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03102,320,059 - 102,348,223 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4391,127,605 - 91,149,178 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1391,023,827 - 91,045,776 (+)NCBI
Celera391,190,477 - 91,211,449 (+)NCBICelera
RH 3.4 Map3722.9RGD
Cytogenetic Map3q33NCBI
Pax6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547610,058,961 - 10,074,162 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547610,058,979 - 10,074,668 (-)NCBIChiLan1.0ChiLan1.0
PAX6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1835,260,520 - 35,281,796 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01836,247,894 - 36,277,423 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1836,247,935 - 36,276,689 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11835,828,719 - 35,849,973 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01835,410,013 - 35,431,263 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01836,045,041 - 36,066,313 (+)NCBIUU_Cfam_GSD_1.0
Pax6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494732,827,732 - 32,856,209 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365335,957,971 - 5,982,075 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365335,952,529 - 5,980,889 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAX6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl228,978,287 - 29,001,200 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1228,971,565 - 29,001,149 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2231,478,545 - 31,510,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAX6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1133,386,165 - 33,414,605 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl133,392,970 - 33,414,587 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038130,542,963 - 130,572,341 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pax6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476620,536,233 - 20,554,759 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476620,536,581 - 20,554,589 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003830406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003830407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003830408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003830409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003830410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008955874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008955875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024930632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024930633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034932356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055094258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057299131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057299132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057299133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057299134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057299135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063608147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000065296   ⟹   ENSPPAP00000042366
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1131,641,813 - 31,664,474 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000065298   ⟹   ENSPPAP00000042368
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1131,641,813 - 31,664,433 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000065299   ⟹   ENSPPAP00000042369
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1131,642,532 - 31,659,536 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000065300   ⟹   ENSPPAP00000042370
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1131,642,532 - 31,659,536 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000065303   ⟹   ENSPPAP00000042373
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1131,642,532 - 31,648,273 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000065309   ⟹   ENSPPAP00000042379
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1131,642,818 - 31,659,536 (-)Ensembl
RefSeq Acc Id: XM_003830406   ⟹   XP_003830454
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,022,266 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,026,726 (-)NCBI
Mhudiblu_PPA_v01131,753,190 - 31,775,635 (-)NCBI
PanPan1.11131,641,813 - 31,664,474 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003830407   ⟹   XP_003830455
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,029,009 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,033,443 (-)NCBI
Mhudiblu_PPA_v01131,753,190 - 31,782,225 (-)NCBI
PanPan1.11131,641,813 - 31,671,071 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003830409   ⟹   XP_003830457
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,028,913 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,033,347 (-)NCBI
Mhudiblu_PPA_v01131,753,190 - 31,782,224 (-)NCBI
PanPan1.11131,641,813 - 31,671,071 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003830410   ⟹   XP_003830458
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,022,279 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,026,740 (-)NCBI
Mhudiblu_PPA_v01131,753,190 - 31,775,635 (-)NCBI
PanPan1.11131,641,813 - 31,664,474 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008955874   ⟹   XP_008954122
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,022,266 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,026,726 (-)NCBI
Mhudiblu_PPA_v01131,753,190 - 31,775,603 (-)NCBI
PanPan1.11131,641,813 - 31,664,474 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008955875   ⟹   XP_008954123
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,022,266 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,026,726 (-)NCBI
Mhudiblu_PPA_v01131,753,190 - 31,775,604 (-)NCBI
PanPan1.11131,642,812 - 31,664,474 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024930632   ⟹   XP_024786400
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,023,146 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,027,606 (-)NCBI
Mhudiblu_PPA_v01131,753,190 - 31,776,460 (-)NCBI
PanPan1.11131,641,813 - 31,665,301 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034932341   ⟹   XP_034788232
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,016,052 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,019,298 (-)NCBI
Mhudiblu_PPA_v01131,753,190 - 31,769,393 (-)NCBI
RefSeq Acc Id: XM_034932343   ⟹   XP_034788234
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,016,056 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,019,300 (-)NCBI
Mhudiblu_PPA_v01131,754,148 - 31,769,395 (-)NCBI
RefSeq Acc Id: XM_034932344   ⟹   XP_034788235
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,020,989 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,026,020 (-)NCBI
Mhudiblu_PPA_v01131,753,190 - 31,774,901 (-)NCBI
RefSeq Acc Id: XM_034932345   ⟹   XP_034788236
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,016,056 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,019,300 (-)NCBI
Mhudiblu_PPA_v01131,754,148 - 31,769,395 (-)NCBI
RefSeq Acc Id: XM_034932347   ⟹   XP_034788238
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,020,989 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,026,017 (-)NCBI
Mhudiblu_PPA_v01131,753,190 - 31,774,243 (-)NCBI
RefSeq Acc Id: XM_034932353   ⟹   XP_034788244
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,012,433 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,016,898 (-)NCBI
Mhudiblu_PPA_v01131,753,190 - 31,770,255 (-)NCBI
RefSeq Acc Id: XM_034932356   ⟹   XP_034788247
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,022,264 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,026,724 (-)NCBI
Mhudiblu_PPA_v01131,753,190 - 31,775,606 (-)NCBI
RefSeq Acc Id: XM_055094258   ⟹   XP_054950233
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,022,262 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,026,721 (-)NCBI
RefSeq Acc Id: XM_057299131   ⟹   XP_057155114
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,022,279 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,026,739 (-)NCBI
RefSeq Acc Id: XM_057299132   ⟹   XP_057155115
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,023,146 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,027,606 (-)NCBI
RefSeq Acc Id: XM_057299133   ⟹   XP_057155116
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,028,913 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,033,347 (-)NCBI
RefSeq Acc Id: XM_057299134   ⟹   XP_057155117
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,022,279 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,026,740 (-)NCBI
RefSeq Acc Id: XM_057299135   ⟹   XP_057155118
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,016,891 (-)NCBI
NHGRI_mPanPan11134,004,314 - 34,021,337 (-)NCBI
RefSeq Acc Id: XM_063608147   ⟹   XP_063464217
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2933,999,843 - 34,011,580 (-)NCBI
RefSeq Acc Id: XP_003830455   ⟸   XM_003830407
- Peptide Label: isoform X5
- UniProtKB: A0A2R9CK82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003830457   ⟸   XM_003830409
- Peptide Label: isoform X3
- UniProtKB: A0A2R9CMS7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003830458   ⟸   XM_003830410
- Peptide Label: isoform X3
- UniProtKB: A0A2R9CMS7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003830454   ⟸   XM_003830406
- Peptide Label: isoform X5
- UniProtKB: A0A2R9CK82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008954122   ⟸   XM_008955874
- Peptide Label: isoform X3
- UniProtKB: A0A2R9CMS7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008954123   ⟸   XM_008955875
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_024786400   ⟸   XM_024930632
- Peptide Label: isoform X3
- UniProtKB: A0A2R9CMS7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034788247   ⟸   XM_034932356
- Peptide Label: isoform X10
RefSeq Acc Id: XP_034788235   ⟸   XM_034932344
- Peptide Label: isoform X3
- UniProtKB: A0A2R9CMS7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034788238   ⟸   XM_034932347
- Peptide Label: isoform X5
- UniProtKB: A0A2R9CK82 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034788244   ⟸   XM_034932353
- Peptide Label: isoform X8
RefSeq Acc Id: XP_034788232   ⟸   XM_034932341
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034788236   ⟸   XM_034932345
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034788234   ⟸   XM_034932343
- Peptide Label: isoform X2
Ensembl Acc Id: ENSPPAP00000042369   ⟸   ENSPPAT00000065299
Ensembl Acc Id: ENSPPAP00000042368   ⟸   ENSPPAT00000065298
Ensembl Acc Id: ENSPPAP00000042366   ⟸   ENSPPAT00000065296
Ensembl Acc Id: ENSPPAP00000042370   ⟸   ENSPPAT00000065300
Ensembl Acc Id: ENSPPAP00000042373   ⟸   ENSPPAT00000065303
Ensembl Acc Id: ENSPPAP00000042379   ⟸   ENSPPAT00000065309
RefSeq Acc Id: XP_054950233   ⟸   XM_055094258
- Peptide Label: isoform X7
RefSeq Acc Id: XP_057155116   ⟸   XM_057299133
- Peptide Label: isoform X6
RefSeq Acc Id: XP_057155115   ⟸   XM_057299132
- Peptide Label: isoform X5
- UniProtKB: A0A2R9CK82 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057155117   ⟸   XM_057299134
- Peptide Label: isoform X6
RefSeq Acc Id: XP_057155114   ⟸   XM_057299131
- Peptide Label: isoform X5
- UniProtKB: A0A2R9CK82 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057155118   ⟸   XM_057299135
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063464217   ⟸   XM_063608147
- Peptide Label: isoform X9
Protein Domains
Homeobox   Paired


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043756 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065296.1 UniProtKB/TrEMBL
  ENSPPAT00000065298.1 UniProtKB/TrEMBL
  ENSPPAT00000065299.1 UniProtKB/TrEMBL
  ENSPPAT00000065300.1 UniProtKB/TrEMBL
  ENSPPAT00000065303.1 UniProtKB/TrEMBL
  ENSPPAT00000065309.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  PAIRED_DNA-bd_dom UniProtKB/TrEMBL
  Paired_dom UniProtKB/TrEMBL
  PAX_fam UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report pps:100974759 UniProtKB/TrEMBL
NCBI Gene PAX6 ENTREZGENE
PANTHER PAIRED BOX PROTEIN PAX-6 UniProtKB/TrEMBL
  PAIRED BOX PROTEIN PAX-6 UniProtKB/TrEMBL
  PTHR45636 UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
  PAX UniProtKB/TrEMBL
PRINTS PAIREDBOX UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  PAIRED_1 UniProtKB/TrEMBL
  PAIRED_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
  PAX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A2R9CK73_PANPA UniProtKB/TrEMBL
  A0A2R9CK82 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CK83_PANPA UniProtKB/TrEMBL
  A0A2R9CK91_PANPA UniProtKB/TrEMBL
  A0A2R9CMS7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CMT0_PANPA UniProtKB/TrEMBL