STRIP1 (striatin interacting protein 1) - Rat Genome Database

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Gene: STRIP1 (striatin interacting protein 1) Pan paniscus
Analyze
Symbol: STRIP1
Name: striatin interacting protein 1
RGD ID: 12013552
Description: ENCODES a protein that exhibits protein kinase binding (inferred); small GTPase binding (inferred); INVOLVED IN cortical actin cytoskeleton organization (inferred); cytoskeleton organization (inferred); regulation of cell morphogenesis (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 63 (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FAM40A; family with sequence similarity 40, member A; striatin-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,987,952 - 117,010,554 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11116,136,071 - 116,158,590 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01112,679,005 - 112,701,495 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11127,640,110 - 127,662,593 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1127,640,128 - 127,662,681 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
STRIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,987,952 - 117,010,554 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11116,136,071 - 116,158,590 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01112,679,005 - 112,701,495 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11127,640,110 - 127,662,593 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1127,640,128 - 127,662,681 (-)Ensemblpanpan1.1panPan2
STRIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381110,031,577 - 110,054,641 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1110,031,577 - 110,074,641 (+)EnsemblGRCh38hg38GRCh38
GRCh371110,574,199 - 110,597,263 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361110,378,764 - 110,398,786 (+)NCBINCBI36Build 36hg18NCBI36
Build 341110,289,282 - 110,309,303NCBI
Celera1108,824,240 - 108,844,257 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1108,443,663 - 108,466,730 (+)NCBIHuRef
CHM1_11110,689,030 - 110,712,092 (+)NCBICHM1_1
T2T-CHM13v2.01110,041,710 - 110,064,768 (+)NCBIT2T-CHM13v2.0
Strip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393107,519,848 - 107,539,010 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3107,519,848 - 107,539,010 (-)EnsemblGRCm39 Ensembl
GRCm383107,612,532 - 107,631,710 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3107,612,532 - 107,631,694 (-)EnsemblGRCm38mm10GRCm38
MGSCv373107,415,450 - 107,434,628 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363107,740,588 - 107,759,730 (-)NCBIMGSCv36mm8
Celera3109,944,873 - 109,964,050 (-)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.83NCBI
Strip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82197,936,569 - 197,956,515 (-)NCBIGRCr8
mRatBN7.22195,248,384 - 195,268,330 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2195,248,386 - 195,268,481 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2202,889,533 - 202,909,502 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02200,771,699 - 200,791,644 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02195,588,638 - 195,608,583 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02210,393,708 - 210,413,757 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2210,393,689 - 210,413,985 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02229,860,313 - 229,880,386 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42203,164,423 - 203,184,811 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2187,897,315 - 187,917,368 (-)NCBICelera
Cytogenetic Map2q34NCBI
Strip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543513,560,534 - 13,581,866 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543513,560,533 - 13,578,849 (+)NCBIChiLan1.0ChiLan1.0
STRIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1641,911,361 - 41,930,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl641,912,583 - 41,930,371 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha644,688,513 - 44,706,973 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0642,243,491 - 42,261,954 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl642,243,184 - 42,261,987 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1641,976,422 - 41,994,873 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0641,934,588 - 41,953,024 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0642,369,691 - 42,388,154 (-)NCBIUU_Cfam_GSD_1.0
Strip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505818,599,193 - 18,618,614 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367041,495,495 - 1,515,037 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367041,495,525 - 1,514,942 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STRIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4110,061,604 - 110,080,822 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14110,061,596 - 110,081,017 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24120,531,377 - 120,550,742 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STRIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12023,487,653 - 23,508,732 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2023,486,666 - 23,508,238 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603834,951,180 - 34,971,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Strip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247725,802,065 - 5,822,901 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247725,802,389 - 5,821,695 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000039447   ⟹   ENSPPAP00000016749
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1127,640,128 - 127,662,681 (-)Ensembl
RefSeq Acc Id: XM_003810647   ⟹   XP_003810695
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21116,987,952 - 117,010,554 (-)NCBI
NHGRI_mPanPan11116,136,071 - 116,158,590 (-)NCBI
Mhudiblu_PPA_v01112,679,006 - 112,701,495 (+)NCBI
PanPan1.11127,640,110 - 127,662,593 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003810695 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000016749.1
RefSeq Acc Id: XP_003810695   ⟸   XM_003810647
- Sequence:
RefSeq Acc Id: ENSPPAP00000016749   ⟸   ENSPPAT00000039447

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031474 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000039447.1 UniProtKB/TrEMBL
InterPro Far11/STRP UniProtKB/TrEMBL
  Far11/STRP_C UniProtKB/TrEMBL
  Far11/STRP_N UniProtKB/TrEMBL
NCBI Gene STRIP1 ENTREZGENE
PANTHER PTHR13239 UniProtKB/TrEMBL
  STRIATIN-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
Pfam DUF3402 UniProtKB/TrEMBL
  N1221 UniProtKB/TrEMBL
SMART DUF3402 UniProtKB/TrEMBL
  N1221 UniProtKB/TrEMBL
UniProt A0A2R9APC3_PANPA UniProtKB/TrEMBL