TACSTD2 (tumor associated calcium signal transducer 2) - Rat Genome Database
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Gene: TACSTD2 (tumor associated calcium signal transducer 2) Pan paniscus
Analyze
Symbol: TACSTD2
Name: tumor associated calcium signal transducer 2
RGD ID: 12010763
Description: INVOLVED IN negative regulation of branching involved in ureteric bud morphogenesis (ortholog); negative regulation of cell motility (ortholog); negative regulation of epithelial cell migration (ortholog); ASSOCIATED WITH corneal dystrophy (ortholog); endometriosis (ortholog); gelatinous drop-like corneal dystrophy (ortholog); FOUND IN basal plasma membrane (ortholog); extracellular space (ortholog); lateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: tumor-associated calcium signal transducer 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1159,544,868 - 59,547,207 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl159,545,625 - 59,546,596 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0157,838,661 - 57,841,444 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
TACSTD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1159,544,868 - 59,547,207 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl159,545,625 - 59,546,596 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0157,838,661 - 57,841,444 (-)NCBIMhudiblu_PPA_v0panPan3
TACSTD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl158,575,433 - 58,577,252 (-)EnsemblGRCh38hg38GRCh38
GRCh38158,575,433 - 58,577,252 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37159,041,105 - 59,042,924 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36158,813,231 - 58,816,033 (-)NCBINCBI36hg18NCBI36
Build 34158,752,663 - 58,755,466NCBI
Celera157,324,947 - 57,327,018 (-)NCBI
Cytogenetic Map1p32.1NCBI
HuRef157,151,670 - 57,153,741 (-)NCBIHuRef
CHM1_1159,156,449 - 59,158,520 (-)NCBICHM1_1
Tacstd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39667,511,043 - 67,512,806 (-)NCBIGRCm39mm39
GRCm39 Ensembl667,511,046 - 67,512,780 (-)Ensembl
GRCm38667,534,059 - 67,535,822 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl667,534,062 - 67,535,796 (-)EnsemblGRCm38mm10GRCm38
MGSCv37667,484,053 - 67,485,816 (-)NCBIGRCm37mm9NCBIm37
MGSCv36667,463,640 - 67,465,374 (-)NCBImm8
Celera669,652,700 - 69,654,464 (-)NCBICelera
Cytogenetic Map6C1NCBI
Tacstd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2496,707,950 - 96,709,650 (-)NCBI
Rnor_6.0 Ensembl498,341,188 - 98,342,887 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0498,341,187 - 98,342,887 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04163,126,801 - 163,128,501 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4497,803,151 - 97,804,851 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1498,047,632 - 98,049,313 (-)NCBI
Celera491,374,254 - 91,375,954 (-)NCBICelera
Cytogenetic Map4q31NCBI
Tacstd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554641,282,989 - 1,284,785 (+)NCBIChiLan1.0ChiLan1.0
TACSTD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1551,122,469 - 51,123,753 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tacstd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365223,206,826 - 3,208,675 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TACSTD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6153,859,482 - 153,861,492 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16153,859,488 - 153,861,508 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26141,453,653 - 141,455,459 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TACSTD2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12074,403,547 - 74,406,756 (+)NCBI
Tacstd2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248621,721,030 - 1,722,780 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003824220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000012481   ⟹   ENSPPAP00000002625
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl159,545,625 - 59,546,596 (-)Ensembl
RefSeq Acc Id: XM_003824220   ⟹   XP_003824268
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1159,544,868 - 59,547,207 (-)NCBI
Mhudiblu_PPA_v0157,838,661 - 57,841,444 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003824268 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003824268   ⟸   XM_003824220
- Sequence:
RefSeq Acc Id: ENSPPAP00000002625   ⟸   ENSPPAT00000012481
Protein Domains
Thyroglobulin type-1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000011467 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000002625 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000012481 UniProtKB/TrEMBL
Gene3D-CATH 4.10.800.10 UniProtKB/TrEMBL
InterPro EPCAM/Trop-2 UniProtKB/TrEMBL
  Thyroglobulin_1 UniProtKB/TrEMBL
  Thyroglobulin_1_sf UniProtKB/TrEMBL
KEGG Report pps:100980222 UniProtKB/TrEMBL
NCBI Gene TACSTD2 ENTREZGENE
PANTHER PTHR14168 UniProtKB/TrEMBL
Pfam Thyroglobulin_1 UniProtKB/TrEMBL
PROSITE THYROGLOBULIN_1_1 UniProtKB/TrEMBL
  THYROGLOBULIN_1_2 UniProtKB/TrEMBL
SMART SM00211 UniProtKB/TrEMBL
Superfamily-SCOP SSF57610 UniProtKB/TrEMBL
UniProt A0A2R8ZC40_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-08 TACSTD2  tumor associated calcium signal transducer 2    tumor-associated calcium signal transducer 2  Symbol and/or name change 5135510 APPROVED