RPN1 (ribophorin I) - Rat Genome Database

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Gene: RPN1 (ribophorin I) Pan paniscus
Analyze
Symbol: RPN1
Name: ribophorin I
RGD ID: 12009661
Description: INVOLVED IN protein glycosylation (inferred); protein N-linked glycosylation (inferred); protein N-linked glycosylation via asparagine (inferred); ASSOCIATED WITH alkaptonuria (ortholog); genetic disease (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN oligosaccharyltransferase complex (ortholog); rough endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22126,544,128 - 126,575,301 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13126,548,850 - 126,580,024 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03125,666,844 - 125,697,922 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13133,032,098 - 133,056,733 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,032,560 - 133,058,666 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22126,544,128 - 126,575,301 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13126,548,850 - 126,580,024 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03125,666,844 - 125,697,922 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13133,032,098 - 133,056,733 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,032,560 - 133,058,666 (-)Ensemblpanpan1.1panPan2
RPN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383128,619,969 - 128,650,818 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3128,619,969 - 128,681,075 (-)EnsemblGRCh38hg38GRCh38
GRCh373128,338,812 - 128,369,661 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363129,821,503 - 129,852,409 (-)NCBINCBI36Build 36hg18NCBI36
Build 343129,821,510 - 129,852,378NCBI
Celera3126,767,445 - 126,799,199 (-)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3125,722,987 - 125,753,880 (-)NCBIHuRef
CHM1_13128,301,823 - 128,332,696 (-)NCBICHM1_1
T2T-CHM13v2.03131,361,936 - 131,392,788 (-)NCBIT2T-CHM13v2.0
Rpn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39688,061,455 - 88,082,286 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl688,061,464 - 88,082,286 (+)EnsemblGRCm39 Ensembl
GRCm38688,084,473 - 88,105,304 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl688,084,482 - 88,105,304 (+)EnsemblGRCm38mm10GRCm38
MGSCv37688,034,467 - 88,055,298 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36688,050,157 - 88,070,945 (+)NCBIMGSCv36mm8
Celera690,021,709 - 90,042,660 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.13NCBI
Rpn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84122,100,976 - 122,122,382 (+)NCBIGRCr8
mRatBN7.24120,543,667 - 120,565,069 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4120,543,667 - 120,565,069 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4126,015,899 - 126,037,361 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04121,790,679 - 121,812,141 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04120,414,917 - 120,436,381 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04119,997,232 - 120,018,687 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,997,268 - 120,018,679 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04185,243,182 - 185,264,593 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4109,501,306 - 109,522,708 (+)NCBICelera
Cytogenetic Map4q34NCBI
Rpn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542915,204,453 - 15,232,476 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542915,204,848 - 15,231,547 (+)NCBIChiLan1.0ChiLan1.0
RPN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1202,611,316 - 2,640,047 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl202,611,551 - 2,639,983 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha202,647,475 - 2,676,092 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0202,631,950 - 2,660,570 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl202,631,734 - 2,660,531 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1202,352,624 - 2,381,238 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0202,679,052 - 2,707,535 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0202,639,667 - 2,668,086 (-)NCBIUU_Cfam_GSD_1.0
Rpn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,305,933 - 20,313,522 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936798347,766 - 355,165 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936798347,803 - 355,392 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1371,892,002 - 71,908,932 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11371,892,600 - 71,908,772 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21379,273,302 - 79,289,569 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12252,391,793 - 52,417,341 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2252,391,813 - 52,417,575 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041113,942,601 - 113,968,226 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249619,488 - 45,975 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249619,482 - 45,569 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000029075   ⟹   ENSPPAP00000007065
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3133,032,560 - 133,058,666 (-)Ensembl
RefSeq Acc Id: XM_034957301   ⟹   XP_034813192
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22126,544,128 - 126,575,301 (-)NCBI
NHGRI_mPanPan13126,548,850 - 126,580,024 (-)NCBI
Mhudiblu_PPA_v03125,666,844 - 125,697,922 (-)NCBI
RefSeq Acc Id: XM_063602916   ⟹   XP_063458986
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22126,544,128 - 126,575,292 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034813192 (Get FASTA)   NCBI Sequence Viewer  
  XP_063458986 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000007065.1
RefSeq Acc Id: XP_034813192   ⟸   XM_034957301
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZQ51 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000007065   ⟸   ENSPPAT00000029075
RefSeq Acc Id: XP_063458986   ⟸   XM_063602916
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000026160 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000029075.1 UniProtKB/TrEMBL
InterPro Ribophorin_I UniProtKB/TrEMBL
NCBI Gene RPN1 ENTREZGENE
PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 1 UniProtKB/TrEMBL
  PTHR21049 UniProtKB/TrEMBL
Pfam Ribophorin_I UniProtKB/TrEMBL
UniProt A0A2R8ZQ51 ENTREZGENE, UniProtKB/TrEMBL