ANXA9 (annexin A9) - Rat Genome Database

Name: ANXA9
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: ANXA9 (annexin A9) Pan paniscus

Analyze

Symbol:

ANXA9

Name:

annexin A9

RGD ID:

12009367

Description:

ENCODES a protein that exhibits acetylcholine receptor activity (inferred); cadherin binding involved in cell-cell adhesion (inferred); calcium channel activity (inferred); INVOLVED IN cell-cell adhesion (inferred); synaptic transmission, cholinergic (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); immunodeficiency 42 (ortholog); FOUND IN cell surface (inferred); collagen-containing extracellular matrix (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ANXA9 (annexin A9)	NCBI	Ortholog
Mus musculus (house mouse):	Anxa9 (annexin A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Anxa9 (annexin A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Anxa9 (annexin A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ANXA9 (annexin A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Anxa9 (annexin A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ANXA9 (annexin A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ANXA9 (annexin A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Anxa9 (annexin A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	98,838,011 - 98,858,187 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	98,590,844 - 98,612,418 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	126,331,255 - 126,345,056 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	129,979,652 - 129,993,456 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	129,979,652 - 129,993,456 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-cell adhesion (IEA)

synaptic transmission, cholinergic (IEA)

Cellular Component

cell surface (IEA)

collagen-containing extracellular matrix (IEA)

cytoplasm (IEA)

cytosol (IEA)

extracellular space (IEA)

nucleus (IEA)

plasma membrane (IEA)

synapse (IEA)

vesicle (IEA)

Molecular Function

acetylcholine receptor activity (IEA)

cadherin binding involved in cell-cell adhesion (IEA)

calcium channel activity (IEA)

calcium ion binding (IEA)

calcium-dependent phospholipid binding (IEA)

phosphatidylinositol-4,5-bisphosphate binding (IEA)

phosphatidylserine binding (IEA)

phospholipase A2 inhibitor activity (IEA)

phospholipid binding (IEA)

protease binding (IEA)

protein binding (ISO)

virion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

ANXA9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	98,838,011 - 98,858,187 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	98,590,844 - 98,612,418 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	126,331,255 - 126,345,056 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	129,979,652 - 129,993,456 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	129,979,652 - 129,993,456 (+)	Ensembl	panpan1.1		panPan2

ANXA9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	150,977,306 - 150,995,634 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	150,982,249 - 150,995,634 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	150,954,768 - 150,968,110 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	149,221,123 - 149,234,738 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	147,767,626 - 147,781,180	NCBI
Celera	1	124,070,194 - 124,083,809 (+)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	122,331,599 - 122,345,127 (+)	NCBI		HuRef
CHM1_1	1	152,349,813 - 152,363,425 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	150,101,002 - 150,119,333 (+)	NCBI		T2T-CHM13v2.0

Anxa9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	95,203,404 - 95,222,491 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	95,203,407 - 95,214,487 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	95,296,093 - 95,315,180 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	95,296,096 - 95,307,176 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	95,100,015 - 95,111,098 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	95,381,499 - 95,392,536 (-)	NCBI		MGSCv36	mm8
Celera	3	96,727,395 - 96,738,479 (-)	NCBI		Celera
Cytogenetic Map	3	F2.1	NCBI
cM Map	3	40.74	NCBI

Anxa9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	185,562,174 - 185,572,560 (-)	NCBI		GRCr8
mRatBN7.2	2	182,873,185 - 182,884,501 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	182,872,929 - 182,883,374 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	2	196,470,318 - 196,481,568 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	196,470,858 - 196,479,770 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	215,967,799 - 215,979,450 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	190,206,342 - 190,215,046 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	175,406,580 - 175,417,837 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Anxa9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955588	352,176 - 370,418 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955588	352,175 - 374,723 (+)	NCBI	ChiLan1.0	ChiLan1.0

ANXA9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	60,084,296 - 60,098,631 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	60,084,241 - 60,094,136 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	59,528,332 - 59,544,279 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	61,100,321 - 61,116,297 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	61,100,394 - 61,112,110 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	59,929,420 - 59,945,384 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	60,014,313 - 60,027,630 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	60,741,836 - 60,757,800 (+)	NCBI		UU_Cfam_GSD_1.0

Anxa9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	22,171,059 - 22,187,729 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	1,208,120 - 1,220,173 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	1,208,536 - 1,218,438 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ANXA9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	98,229,449 - 98,242,718 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	98,224,436 - 98,243,957 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	107,485,930 - 107,497,811 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ANXA9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666038	12,285,186 - 12,302,514 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Anxa9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	18,827,061 - 18,842,457 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624772	18,827,061 - 18,848,683 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003817279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008970447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000046873 ⟹ ENSPPAP00000024048

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	129,979,652 - 129,993,456 (+)	Ensembl

RefSeq Acc Id:

XM_003817279 ⟹ XP_003817327

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	98,838,011 - 98,858,187 (-)	NCBI
NHGRI_mPanPan1	1	98,590,844 - 98,612,418 (-)	NCBI
Mhudiblu_PPA_v0	1	126,331,255 - 126,345,056 (+)	NCBI
PanPan1.1	1	129,979,652 - 129,993,456 (+)	NCBI

Sequence:

show sequence

ACCTGGACCCACAGGGAAGGCAGTGCATAAAAGCCTCCTGTGTTTGAGGCTGAGCCGCTGAGAG
GCTGAGTGGAGTTCACTCACATGGATTGAGGCCCAGTTCCTGGGAGAAGAGATGCTGGGCAGGA
AGGTGTCTGTATGTGGGACTCTGTACAGCCCGGTCCTCTCCCACGTCTGGGAGGGGCCAGAGTC
AGACAACTGCTGGGTTCGTCCCTAAGAGAGGTCATCTGACTGGCTGTTCAGCCTAGGCTGCACA
CGCCCCCACTTTCCTCTACCAGGCCACACCGGAGGCAGTGCTCACACAGGCAAGCTACCAGGCC
ACAACAACGACACCCACCTCACCTCTGGCACCTCTGAGCATCCACGTACTTGCAAGAACTCTTG
CTCACATCAGCTAAGAGATTGCACCTGCTGACCTAGAGATTCCGGCCTGTGCTCCTGTGCTGCT
GAGCAGGGCAACCAGTAGCACCATGTCTGTGACTGGCGGGAAGATGGCACCGTCCCTCACCCAG
GAGATCCTCAGCCACCTGGGCCTGGCCAGCAAGACTGCAGCGTGGGGGACCCTGGGCACCCTCA
GGACCTTCTTGAACTTCAGCGTGGACAAGGATGCGCAGAGGCTACTGAGGGCCATTACTGGCCA
AGGCGTGGACCGCAGTGCCATTGTGGACGTGCTGACCAACCGGAGCAGAGAGCAAAGGCAGCTC
ATCTCACGAAACTTCCAGGAGCGCACCCAACAGGACCTGATGAAGTCTCTACAGGCAGCACTTT
CCGGCAACCTGGAGAGGATTGTGATGGCTCTGCTGCAGCCCACAGCCCAGTTTGACGCCCAGGA
ATTGAGGACAGCTCTGAAGGCCTCAGATTCTGCTGTGGACGTGGCCATTGAAATTCTTGCCACT
CGAACCCCACCCCAGCTGCAGGAGTGCCTGGCAGTCTACAAACACAATTTCCAGGTGGAGGCTG
TGGATGACATCACATCTGAGACCAGTGGCATCTTGCAGGACCTGCTCTTGGCCCTGGCCAAGGG
GGGCCGTGACAGCTACTGTGGAATCATTGACTATAATCTGGCAGAACAAGATGTCCAGGCACTG
CAGCGGGCAGAAGGACCTAGCAGAGAGGAAACATGGGTCCCAGTCTTCACCCAGCGAAATCCTG
AACACCTCATCCGAGTGTTTGATCAGTACCAGCAGAGCACTGGGCAAGAGCTGGAGGAGGCTGT
CCAGAACCGTTTCCATGGAGATGCTCAGGTGGCTCTGCTCGGCCTAGCTTCGGTGATCAAGAAC
ACACCGCTGTACTTTGCTGACAAACTTCATCAAGCCCTCCAGGAAACTGAGCCCAATTACCAAG
TCCTGATTCGCATCCTTATCTCTCGATGTGAGACTGACCTTCTGAGTATCAGAGCTGAGTTCAA
GAAGAAATTTGGGAAGTCCCTCTACTCTTCTCTCCAGGATGCAGTGAAAGGGGATTGCCAGTCA
GCCCTCCTGGCCTTGTGCAGGGCTGAAGACATGTGAGACTTCCCTGCCCCACCCCACATGACAT
CCGAGGATCTGAGATTTCCGTGTTTGGCTGAACCTGGGAGACCAGCTGGGCCTCCAAGTAGGAT
AATCCCTCACTGAGCACCACATTCTCTAGCTTCTTGTTGAGGCTGGAACTGTTTCTTTAAAATC
CCTTAATTTTCCCATCTCAAAATTATATCTGTACCTGGGTCATCCAGCTCCTTCTTGGGTGTGG
GGAAATGAGTTTTCTTTGATAGTTTCTGCCTCACTCATCCCTCCTGTACCCTGGCCAGAACATC
TCACTGATACTCGAATTCTTTTGGCAAACTTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_003817327	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000024048.1

RefSeq Acc Id:

XP_003817327 ⟸ XM_003817279

- Sequence:

show sequence

MSVTGGKMAPSLTQEILSHLGLASKTAAWGTLGTLRTFLNFSVDKDAQRLLRAITGQGVDRSAI
VDVLTNRSREQRQLISRNFQERTQQDLMKSLQAALSGNLERIVMALLQPTAQFDAQELRTALKA
SDSAVDVAIEILATRTPPQLQECLAVYKHNFQVEAVDDITSETSGILQDLLLALAKGGRDSYCG
IIDYNLAEQDVQALQRAEGPSREETWVPVFTQRNPEHLIRVFDQYQQSTGQELEEAVQNRFHGD
AQVALLGLASVIKNTPLYFADKLHQALQETEPNYQVLIRILISRCETDLLSIRAEFKKKFGKSL
YSSLQDAVKGDCQSALLALCRAEDM

hide sequence

RefSeq Acc Id:

ENSPPAP00000024048 ⟸ ENSPPAT00000046873

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000035171	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000046873.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.220.10	UniProtKB/TrEMBL
InterPro	Annexin	UniProtKB/TrEMBL
	Annexin_repeat	UniProtKB/TrEMBL
	Annexin_repeat_CS	UniProtKB/TrEMBL
	Annexin_sf	UniProtKB/TrEMBL
	ANX9	UniProtKB/TrEMBL
KEGG Report	pps:100969874	UniProtKB/TrEMBL
NCBI Gene	ANXA9	ENTREZGENE
PANTHER	ANNEXIN	UniProtKB/TrEMBL
	PTHR10502:SF122	UniProtKB/TrEMBL
Pfam	Annexin	UniProtKB/TrEMBL
PRINTS	ANNEXIN	UniProtKB/TrEMBL
	ANNEXINXXXI	UniProtKB/TrEMBL
PROSITE	ANNEXIN_1	UniProtKB/TrEMBL
	ANNEXIN_2	UniProtKB/TrEMBL
SMART	ANX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47874	UniProtKB/TrEMBL
UniProt	A0A2R9B3A6_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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