CCDC150 (coiled-coil domain containing 150) - Rat Genome Database

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Gene: CCDC150 (coiled-coil domain containing 150) Pan paniscus
Analyze
Symbol: CCDC150
Name: coiled-coil domain containing 150
RGD ID: 12008654
Description: ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 150
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21399,259,713 - 99,352,901 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B99,274,705 - 99,367,892 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B83,884,052 - 83,976,949 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B201,782,561 - 201,875,446 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B201,782,696 - 201,875,211 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
CCDC150
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21399,259,713 - 99,352,901 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B99,274,705 - 99,367,892 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B83,884,052 - 83,976,949 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B201,782,561 - 201,875,446 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B201,782,696 - 201,875,211 (+)Ensemblpanpan1.1panPan2
CCDC150
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382196,639,715 - 196,732,806 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2196,639,554 - 196,763,490 (+)EnsemblGRCh38hg38GRCh38
GRCh372197,504,439 - 197,597,530 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362197,212,601 - 197,305,775 (+)NCBINCBI36Build 36hg18NCBI36
Celera2191,260,248 - 191,353,407 (+)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2189,356,685 - 189,450,073 (+)NCBIHuRef
CHM1_12197,510,246 - 197,603,398 (+)NCBICHM1_1
T2T-CHM13v2.02197,123,662 - 197,216,860 (+)NCBIT2T-CHM13v2.0
Ccdc150
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39154,289,820 - 54,407,893 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl154,289,842 - 54,407,886 (+)EnsemblGRCm39 Ensembl
GRCm38154,250,661 - 54,368,727 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl154,250,683 - 54,368,727 (+)EnsemblGRCm38mm10GRCm38
MGSCv37154,307,527 - 54,425,571 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36154,195,228 - 54,313,272 (+)NCBIMGSCv36mm8
Celera154,795,551 - 54,906,761 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map127.06NCBI
Ccdc150
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8963,287,962 - 63,403,644 (+)NCBIGRCr8
mRatBN7.2955,793,544 - 55,897,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl955,793,551 - 55,897,224 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx964,326,803 - 64,413,618 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0969,442,591 - 69,529,406 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0967,734,265 - 67,821,301 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0960,883,966 - 60,989,369 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl960,883,981 - 60,987,349 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0960,568,027 - 60,688,178 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4953,085,922 - 53,172,920 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1953,028,413 - 53,174,334 (+)NCBI
Celera953,300,125 - 53,386,830 (+)NCBICelera
Cytogenetic Map9q31NCBI
Ccdc150
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554033,646,185 - 3,720,401 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554033,645,202 - 3,720,343 (-)NCBIChiLan1.0ChiLan1.0
CCDC150
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1376,257,000 - 6,336,636 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl376,257,573 - 6,336,606 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha377,205,445 - 7,284,459 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0376,147,146 - 6,226,683 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl376,147,780 - 6,226,653 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1376,146,614 - 6,226,486 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0376,113,648 - 6,192,937 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0376,135,885 - 6,215,412 (+)NCBIUU_Cfam_GSD_1.0
Ccdc150
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303154,321,229 - 154,436,759 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365062,403,034 - 2,516,712 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC150
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15100,539,414 - 100,634,779 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115100,539,393 - 100,634,578 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215111,698,931 - 111,811,326 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC150
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11082,170,501 - 82,265,355 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1082,177,426 - 82,265,318 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040117,190,198 - 117,285,423 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc150
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624854365,354 - 438,170 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000055004   ⟹   ENSPPAP00000032138
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B201,782,696 - 201,875,211 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000055010   ⟹   ENSPPAP00000032144
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B201,856,047 - 201,875,211 (+)Ensembl
RefSeq Acc Id: XM_055108914   ⟹   XP_054964889
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21399,259,713 - 99,352,901 (+)NCBI
NHGRI_mPanPan12B99,274,705 - 99,367,892 (+)NCBI
RefSeq Acc Id: XM_055108915   ⟹   XP_054964890
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21399,259,713 - 99,352,901 (+)NCBI
NHGRI_mPanPan12B99,274,705 - 99,367,892 (+)NCBI
RefSeq Acc Id: XM_055108916   ⟹   XP_054964891
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21399,259,713 - 99,352,900 (+)NCBI
NHGRI_mPanPan12B99,274,705 - 99,367,891 (+)NCBI
RefSeq Acc Id: XM_055108917   ⟹   XP_054964892
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21399,259,714 - 99,352,901 (+)NCBI
NHGRI_mPanPan12B99,274,705 - 99,367,892 (+)NCBI
RefSeq Acc Id: XM_055108918   ⟹   XP_054964893
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21399,333,179 - 99,352,900 (+)NCBI
NHGRI_mPanPan12B99,348,171 - 99,367,891 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000032144   ⟸   ENSPPAT00000055010
RefSeq Acc Id: ENSPPAP00000032138   ⟸   ENSPPAT00000055004
RefSeq Acc Id: XP_054964890   ⟸   XM_055108915
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BR42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054964889   ⟸   XM_055108914
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BR42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054964891   ⟸   XM_055108916
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BR42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054964892   ⟸   XM_055108917
- Peptide Label: isoform X4
- UniProtKB: A0A2R9BR42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054964893   ⟸   XM_055108918
- Peptide Label: isoform X5
- UniProtKB: A0A2R9C068 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038945 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000055004.1 UniProtKB/TrEMBL
  ENSPPAT00000055010.1 UniProtKB/TrEMBL
InterPro CCDC150 UniProtKB/TrEMBL
NCBI Gene CCDC150 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 150 UniProtKB/TrEMBL
  PTHR35352 UniProtKB/TrEMBL
UniProt A0A2R9BR42 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C068 ENTREZGENE, UniProtKB/TrEMBL