MAGEA10 (MAGE family member A10) - Rat Genome Database

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Gene: MAGEA10 (MAGE family member A10) Pan paniscus
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Symbol: MAGEA10
Name: MAGE family member A10
RGD ID: 12007239
Description: ENCODES a protein that exhibits histone deacetylase binding (inferred); INVOLVED IN negative regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: melanoma-associated antigen 10
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X152,196,292 - 152,201,536 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X152,199,896 - 152,205,139 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X141,706,481 - 141,711,724 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X151,664,072 - 151,669,313 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX151,665,271 - 151,666,368 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MAGEA10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X152,196,292 - 152,201,536 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X152,199,896 - 152,205,139 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X141,706,481 - 141,711,724 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X151,664,072 - 151,669,313 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX151,665,271 - 151,666,368 (-)Ensemblpanpan1.1panPan2
MAGEA10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X152,133,310 - 152,138,577 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX152,133,310 - 152,138,578 (-)EnsemblGRCh38hg38GRCh38
GRCh37X151,301,782 - 151,307,049 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X151,053,547 - 151,057,681 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X150,973,477 - 150,977,593NCBI
CeleraX151,548,374 - 151,552,508 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX140,155,676 - 140,160,867 (-)NCBIHuRef
CHM1_1X151,176,536 - 151,181,809 (-)NCBICHM1_1
T2T-CHM13v2.0X150,399,374 - 150,404,642 (-)NCBIT2T-CHM13v2.0
Magea10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X71,425,476 - 71,430,464 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX71,425,476 - 71,430,464 (-)EnsemblGRCm39 Ensembl
GRCm38X72,381,870 - 72,386,858 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX72,381,870 - 72,386,858 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X69,627,209 - 69,632,197 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X68,634,696 - 68,636,106 (-)NCBIMGSCv36mm8
CeleraX63,347,166 - 63,352,154 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.23NCBI
Magea10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X155,255,035 - 155,260,281 (-)NCBIGRCr8
mRatBN7.2X150,212,708 - 150,217,954 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX150,213,245 - 150,214,213 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X152,365,785 - 152,371,961 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX152,366,893 - 152,367,861 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01148,095,023 - 148,099,888 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X158,161,275 - 158,162,243 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1131,188,340 - 131,193,205 (-)NCBICelera
Cytogenetic MapXq37NCBI
LOC102156856
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X119,870,208 - 119,874,269 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX105,252,754 - 105,256,817 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X122,090,617 - 122,094,683 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X118,811,025 - 118,815,085 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X121,293,967 - 121,298,021 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X121,176,373 - 121,180,439 (+)NCBIUU_Cfam_GSD_1.0
Magea10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X117,537,009 - 117,543,667 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936714717,931 - 718,967 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936714717,931 - 719,028 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAGEA10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX123,400,803 - 123,401,909 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X123,400,803 - 123,401,915 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MAGEA10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X126,703,290 - 126,706,356 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606564,502,250 - 64,503,362 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000005321   ⟹   ENSPPAP00000001134
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX151,665,271 - 151,666,368 (-)Ensembl
RefSeq Acc Id: XM_008960603   ⟹   XP_008958851
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X152,196,292 - 152,201,536 (-)NCBI
NHGRI_mPanPan1X152,199,896 - 152,205,139 (-)NCBI
Mhudiblu_PPA_v0X141,706,481 - 141,711,724 (-)NCBI
PanPan1.1X151,664,072 - 151,669,313 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008960606   ⟹   XP_008958854
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X152,196,292 - 152,201,536 (-)NCBI
NHGRI_mPanPan1X152,199,896 - 152,205,139 (-)NCBI
Mhudiblu_PPA_v0X141,706,481 - 141,711,724 (-)NCBI
PanPan1.1X151,664,072 - 151,669,313 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055106642   ⟹   XP_054962617
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X152,196,303 - 152,201,256 (-)NCBI
NHGRI_mPanPan1X152,199,907 - 152,204,859 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008958851 (Get FASTA)   NCBI Sequence Viewer  
  XP_008958854 (Get FASTA)   NCBI Sequence Viewer  
  XP_054962617 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000001134
  ENSPPAP00000001134.1
RefSeq Acc Id: XP_008958851   ⟸   XM_008960603
- UniProtKB: A0A2R8Z8F4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008958854   ⟸   XM_008960606
- UniProtKB: A0A2R8Z8F4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000001134   ⟸   ENSPPAT00000005321
RefSeq Acc Id: XP_054962617   ⟸   XM_055106642
- UniProtKB: A0A2R8Z8F4 (UniProtKB/TrEMBL)
Protein Domains
MAGE


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000004915 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000005321.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1200 UniProtKB/TrEMBL
  1.10.10.1210 UniProtKB/TrEMBL
InterPro MAGE UniProtKB/TrEMBL
  MAGE_N UniProtKB/TrEMBL
  MAGE_WH1 UniProtKB/TrEMBL
  MAGE_WH2 UniProtKB/TrEMBL
  MHD_dom UniProtKB/TrEMBL
KEGG Report pps:100976364 UniProtKB/TrEMBL
NCBI Gene MAGEA10 ENTREZGENE
PANTHER PTHR11736 UniProtKB/TrEMBL
  PTHR11736:SF153 UniProtKB/TrEMBL
Pfam MAGE UniProtKB/TrEMBL
  MAGE_N UniProtKB/TrEMBL
PROSITE MAGE UniProtKB/TrEMBL
SMART MAGE UniProtKB/TrEMBL
  MAGE_N UniProtKB/TrEMBL
UniProt A0A2R8Z8F4 ENTREZGENE, UniProtKB/TrEMBL