TNFRSF10D (TNF receptor superfamily member 10d) - Rat Genome Database

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Gene: TNFRSF10D (TNF receptor superfamily member 10d) Pan paniscus
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Symbol: TNFRSF10D
Name: TNF receptor superfamily member 10d
RGD ID: 12007021
Description: ENCODES a protein that exhibits TRAIL binding (inferred); INVOLVED IN positive regulation of apoptotic process (inferred); TRAIL-activated apoptotic signaling pathway (inferred); PARTICIPATES IN Trail mediated signaling pathway; ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); genetic disease (ortholog); FOUND IN cell surface (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor receptor superfamily member 10D
RGD Orthologs
Human
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2741,640,792 - 41,671,668 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1817,368,008 - 17,398,908 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0822,385,592 - 22,414,142 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1819,324,227 - 19,352,765 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl819,324,232 - 19,352,766 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TNFRSF10D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2741,640,792 - 41,671,668 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1817,368,008 - 17,398,908 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0822,385,592 - 22,414,142 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1819,324,227 - 19,352,765 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl819,324,232 - 19,352,766 (-)Ensemblpanpan1.1panPan2
TNFRSF10D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38823,135,588 - 23,164,027 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl823,135,588 - 23,164,027 (-)EnsemblGRCh38hg38GRCh38
GRCh37822,993,101 - 23,021,540 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36823,049,046 - 23,077,485 (-)NCBINCBI36Build 36hg18NCBI36
Build 34823,049,050 - 23,077,485NCBI
Celera821,955,621 - 21,984,098 (-)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef821,537,244 - 21,566,418 (-)NCBIHuRef
CHM1_1823,195,178 - 23,223,618 (-)NCBICHM1_1
T2T-CHM13v2.0823,410,522 - 23,438,957 (-)NCBIT2T-CHM13v2.0
LOC100688321
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11847,008,850 - 47,029,029 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1845,618,336 - 45,638,466 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01847,690,572 - 47,710,704 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11847,133,957 - 47,154,145 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01846,717,848 - 46,738,039 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01847,463,752 - 47,484,245 (-)NCBIUU_Cfam_GSD_1.0
LOC103215471
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1821,242,378 - 21,300,551 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366689810,599 - 28,197 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003823581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000044418   ⟹   ENSPPAP00000021615
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl819,324,232 - 19,352,766 (-)Ensembl
RefSeq Acc Id: XM_003823581   ⟹   XP_003823629
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2741,640,792 - 41,671,668 (-)NCBI
NHGRI_mPanPan1817,368,008 - 17,398,908 (-)NCBI
Mhudiblu_PPA_v0822,385,592 - 22,414,142 (-)NCBI
PanPan1.1819,324,227 - 19,352,765 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003823629 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000021615.1
RefSeq Acc Id: XP_003823629   ⟸   XM_003823581
- Sequence:
RefSeq Acc Id: ENSPPAP00000021615   ⟸   ENSPPAT00000044418
Protein Domains
TNFR-Cys


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034029 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000044418.1 UniProtKB/TrEMBL
Gene3D-CATH Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
InterPro TNFR/NGFR_Cys_rich_reg UniProtKB/TrEMBL
  TNFR_10 UniProtKB/TrEMBL
  TNFRSF10_N UniProtKB/TrEMBL
KEGG Report pps:100971727 UniProtKB/TrEMBL
NCBI Gene TNFRSF10D ENTREZGENE
PANTHER TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 10B UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 10D UniProtKB/TrEMBL
Pfam TNFR_c6 UniProtKB/TrEMBL
PRINTS TNFACTORR10 UniProtKB/TrEMBL
PROSITE TNFR_NGFR_1 UniProtKB/TrEMBL
  TNFR_NGFR_2 UniProtKB/TrEMBL
SMART TNFR UniProtKB/TrEMBL
Superfamily-SCOP TNF receptor-like UniProtKB/TrEMBL
UniProt A0A2R9B2D6_PANPA UniProtKB/TrEMBL