TMEM52B (transmembrane protein 52B) - Rat Genome Database

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Gene: TMEM52B (transmembrane protein 52B) Pan paniscus
Analyze
Symbol: TMEM52B
Name: transmembrane protein 52B
RGD ID: 12006485
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC112441413; uncharacterized LOC112441413
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21015,653,150 - 15,672,628 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11215,649,908 - 15,671,500 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01210,209,071 - 10,229,999 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11210,467,782 - 10,480,379 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,467,782 - 10,481,626 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
TMEM52B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21015,653,150 - 15,672,628 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11215,649,908 - 15,671,500 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01210,209,071 - 10,229,999 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11210,467,782 - 10,480,379 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,467,782 - 10,481,626 (+)Ensemblpanpan1.1panPan2
TMEM52B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381210,170,513 - 10,191,804 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1210,170,542 - 10,191,804 (+)EnsemblGRCh38hg38GRCh38
GRCh371210,323,112 - 10,344,403 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,222,824 - 10,235,670 (+)NCBINCBI36Build 36hg18NCBI36
Celera1215,492,222 - 15,505,070 (+)NCBICelera
Cytogenetic Map12p13.2NCBI
HuRef1210,075,589 - 10,087,901 (+)NCBIHuRef
CHM1_11210,300,845 - 10,313,694 (+)NCBICHM1_1
T2T-CHM13v2.01210,057,239 - 10,078,519 (+)NCBIT2T-CHM13v2.0
Tmem52b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396129,489,512 - 129,496,190 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6129,489,518 - 129,496,190 (+)EnsemblGRCm39 Ensembl
GRCm386129,512,549 - 129,519,227 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6129,512,555 - 129,519,227 (+)EnsemblGRCm38mm10GRCm38
MGSCv376129,462,575 - 129,469,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366129,478,250 - 129,484,920 (+)NCBIMGSCv36mm8
Celera6131,236,405 - 131,243,120 (+)NCBICelera
Cytogenetic Map6F3NCBI
cM Map663.37NCBI
Tmem52b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84164,640,049 - 164,645,244 (+)NCBIGRCr8
mRatBN7.24162,954,025 - 162,959,220 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4162,954,025 - 162,959,220 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4169,188,845 - 169,194,046 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04164,971,801 - 164,976,984 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04163,605,839 - 163,611,036 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04163,267,410 - 163,273,533 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4163,267,450 - 163,274,028 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04211,910,973 - 211,917,065 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44166,774,844 - 166,780,043 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4151,638,353 - 151,643,548 (+)NCBICelera
Cytogenetic Map4q42NCBI
Tmem52b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554137,695,050 - 7,704,136 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554137,695,578 - 7,711,866 (-)NCBIChiLan1.0ChiLan1.0
TMEM52B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12735,813,821 - 35,822,684 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2735,810,765 - 35,822,553 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2710,800,926 - 10,809,828 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02736,159,853 - 36,168,757 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2736,160,789 - 36,168,706 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12736,048,029 - 36,056,926 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02736,070,041 - 36,078,943 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02710,322,636 - 10,331,541 (+)NCBIUU_Cfam_GSD_1.0
Tmem52b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494597,260,360 - 97,267,970 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936902393,170 - 399,113 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936902391,985 - 399,091 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM52B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl561,779,815 - 61,788,561 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1561,779,813 - 61,788,625 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2564,601,200 - 64,610,019 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM52B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,054,481 - 10,066,955 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,055,095 - 10,068,220 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660892,130,942 - 2,142,089 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem52b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475226,939,292 - 26,947,581 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475226,928,774 - 26,947,359 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000039133   ⟹   ENSPPAP00000016437
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1210,467,782 - 10,480,379 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000039138   ⟹   ENSPPAP00000016442
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1210,467,788 - 10,481,626 (+)Ensembl
RefSeq Acc Id: XM_034935349   ⟹   XP_034791240
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21015,653,150 - 15,672,628 (+)NCBI
NHGRI_mPanPan11215,649,908 - 15,671,500 (+)NCBI
Mhudiblu_PPA_v01210,209,071 - 10,229,999 (+)NCBI
RefSeq Acc Id: XM_055095382   ⟹   XP_054951357
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21015,660,468 - 15,672,628 (+)NCBI
NHGRI_mPanPan11215,657,223 - 15,671,500 (+)NCBI
RefSeq Acc Id: XM_063593000   ⟹   XP_063449070
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21015,653,150 - 15,672,628 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034791240 (Get FASTA)   NCBI Sequence Viewer  
  XP_054951357 (Get FASTA)   NCBI Sequence Viewer  
  XP_063449070 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000016437.1
  ENSPPAP00000016442.1
Reference Protein Sequences
RefSeq Acc Id: XP_034791240   ⟸   XM_034935349
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AGH3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000016442   ⟸   ENSPPAT00000039138
RefSeq Acc Id: ENSPPAP00000016437   ⟸   ENSPPAT00000039133
RefSeq Acc Id: XP_054951357   ⟸   XM_055095382
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063449070   ⟸   XM_063593000
- Peptide Label: isoform X3
- UniProtKB: A0A2R9AGG8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031349 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000039133.1 UniProtKB/TrEMBL
  ENSPPAT00000039138.1 UniProtKB/TrEMBL
InterPro TMEM52 UniProtKB/TrEMBL
KEGG Report pps:100994012 UniProtKB/TrEMBL
NCBI Gene TMEM52B ENTREZGENE
PANTHER PTHR33955 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 52B UniProtKB/TrEMBL
Pfam TMEM52 UniProtKB/TrEMBL
UniProt A0A2R9AGG8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AGH3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-11 TMEM52B  transmembrane protein 52B  LOC112441413  uncharacterized LOC112441413  Data merged from RGD:13555729 737654 PROVISIONAL