SHPK (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 19 | 11,219,432 - 11,248,307 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 17 | 13,186,609 - 13,235,292 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 17 | 3,657,764 - 3,686,791 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 17 | 3,654,237 - 3,683,422 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 17 | 3,654,237 - 3,683,421 (-) | Ensembl | panpan1.1 | | panPan2 | |
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SHPK (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 17 | 3,608,240 - 3,636,250 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 17 | 3,608,240 - 3,636,250 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 17 | 3,511,534 - 3,539,544 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 17 | 3,458,305 - 3,486,365 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 17 | 3,458,304 - 3,486,365 | NCBI | | | | | Celera | 17 | 3,525,274 - 3,553,357 (-) | NCBI | | Celera | | | Cytogenetic Map | 17 | p13.2 | NCBI | | | | | HuRef | 17 | 3,403,309 - 3,431,324 (-) | NCBI | | HuRef | | | CHM1_1 | 17 | 3,522,339 - 3,550,373 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 17 | 3,497,275 - 3,525,315 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Shpk (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 11 | 73,090,153 - 73,115,337 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 11 | 73,090,286 - 73,115,337 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 11 | 73,199,132 - 73,224,511 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 11 | 73,199,460 - 73,224,511 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 11 | 73,012,984 - 73,038,008 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 11 | 73,015,677 - 73,040,701 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 11 | 80,736,568 - 80,761,767 (+) | NCBI | | Celera | | | Cytogenetic Map | 11 | B4 | NCBI | | | | | cM Map | 11 | 45.25 | NCBI | | | | |
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Shpk (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 10 | 58,316,065 - 58,340,489 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 10 | 57,817,551 - 57,841,981 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 10 | 57,817,629 - 57,841,980 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 10 | 62,473,323 - 62,497,644 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 10 | 61,961,788 - 61,986,111 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 10 | 57,460,929 - 57,485,241 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 10 | 59,765,328 - 59,789,676 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 10 | 59,765,258 - 59,789,678 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 10 | 59,504,502 - 59,528,849 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 10 | 60,075,861 - 60,100,209 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 10 | 60,089,463 - 60,112,512 (+) | NCBI | | | | | Celera | 10 | 56,940,488 - 56,964,835 (+) | NCBI | | Celera | | | Cytogenetic Map | 10 | q24 | NCBI | | | | |
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Shpk (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955467 | 13,169,063 - 13,212,269 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955467 | 13,169,072 - 13,209,585 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SHPK (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 9 | 47,445,969 - 47,486,756 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 9 | 46,608,830 - 46,649,250 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 9 | 48,291,864 - 48,332,347 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 9 | 48,288,115 - 48,320,151 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 9 | 47,069,503 - 47,110,121 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 9 | 47,358,836 - 47,399,242 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 9 | 47,414,415 - 47,454,872 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Shpk (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SHPK (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 12 | 49,712,177 - 49,732,246 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 12 | 49,713,224 - 49,732,319 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 12 | 51,572,902 - 51,592,034 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SHPK (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 16 | 3,104,139 - 3,138,545 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 16 | 3,105,527 - 3,138,389 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666059 | 18,691,695 - 18,720,574 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Shpk (Heterocephalus glaber - naked mole-rat) |
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