RIBC2 (RIB43A domain with coiled-coils 2)

Gene: RIBC2 (RIB43A domain with coiled-coils 2) Pan paniscus

Analyze

Symbol:

RIBC2

Name:

RIB43A domain with coiled-coils 2

RGD ID:

12004620

Description:

ASSOCIATED WITH Breast Neoplasms (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RIB43A-like with coiled-coils protein 2

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	55,235,551 - 55,288,350 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	57,934,687 - 57,987,034 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	26,299,646 - 26,335,700 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	44,479,585 - 44,501,197 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	44,479,585 - 44,501,197 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Neoplasms (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Phelan-McDermid syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

axonemal A tubule inner sheath (IEA,ISO)

axonemal microtubule (IEA)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

RIBC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	55,235,551 - 55,288,350 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	57,934,687 - 57,987,034 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	26,299,646 - 26,335,700 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	44,479,585 - 44,501,197 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	44,479,585 - 44,501,197 (+)	Ensembl	panpan1.1		panPan2

RIBC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	45,413,693 - 45,432,509 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	45,413,693 - 45,432,509 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	45,809,574 - 45,828,389 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	44,188,244 - 44,206,966 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	44,130,116 - 44,148,839	NCBI
Celera	22	29,720,957 - 29,739,621 (+)	NCBI		Celera
Cytogenetic Map	22	q13.31	NCBI
HuRef	22	28,755,687 - 28,774,418 (+)	NCBI		HuRef
CHM1_1	22	45,768,294 - 45,787,025 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	45,898,580 - 45,917,342 (+)	NCBI		T2T-CHM13v2.0

Ribc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	85,016,261 - 85,028,771 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	85,016,279 - 85,028,771 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	85,132,060 - 85,144,570 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	85,132,078 - 85,144,570 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	84,962,529 - 84,974,999 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	84,959,844 - 84,972,336 (+)	NCBI		MGSCv36	mm8
Celera	15	87,264,622 - 87,277,097 (+)	NCBI		Celera
Cytogenetic Map	15	E2	NCBI
cM Map	15	40.25	NCBI

Ribc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	118,122,722 - 118,137,772 (+)	NCBI		GRCr8
mRatBN7.2	7	116,242,863 - 116,257,868 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	116,242,863 - 116,257,863 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	117,993,721 - 118,008,723 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	120,219,457 - 120,234,459 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	120,188,896 - 120,203,898 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	126,028,371 - 126,043,371 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	126,028,350 - 126,043,847 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	125,742,589 - 125,757,589 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	123,140,197 - 123,155,197 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	123,174,426 - 123,189,427 (+)	NCBI
Celera	7	112,541,028 - 112,556,028 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

Ribc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	29,764,684 - 29,783,711 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	29,765,119 - 29,781,206 (+)	NCBI	ChiLan1.0	ChiLan1.0

RIBC2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	20,625,423 - 20,640,266 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	20,625,447 - 20,640,468 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	20,545,847 - 20,561,082 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	21,359,636 - 21,374,874 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	21,359,660 - 21,374,771 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	21,078,309 - 21,093,539 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	21,392,181 - 21,407,385 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	21,572,266 - 21,587,501 (-)	NCBI		UU_Cfam_GSD_1.0

Ribc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	4,301,677 - 4,315,267 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936629	4,301,746 - 4,315,133 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936629	4,301,746 - 4,315,133 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RIBC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	3,966,440 - 3,975,830 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	3,966,339 - 3,976,024 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	1,200,140 - 1,209,854 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RIBC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	27,879,777 - 27,900,198 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	27,879,972 - 27,900,659 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	97,434,840 - 97,455,649 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ribc2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	4,238,457 - 4,255,537 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	4,241,679 - 4,255,776 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003812388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034949132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063603150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000032307 ⟹ ENSPPAP00000009664

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	22	44,479,585 - 44,501,197 (+)	Ensembl

RefSeq Acc Id:

XM_003812388 ⟹ XP_003812436

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	23	55,239,242 - 55,264,312 (+)	NCBI
NHGRI_mPanPan1	22	57,934,687 - 57,967,881 (+)	NCBI
Mhudiblu_PPA_v0	22	26,299,650 - 26,324,369 (+)	NCBI
PanPan1.1	22	44,479,585 - 44,501,197 (+)	NCBI

Sequence:

show sequence

GAGTTGTTGACATTTCCGAGACAGCGGGAGCGTCTGTACCTCTGCGGCGTCACTGGGAGCCCGA
GGGAAAACTGCGCTAAAGGCTTGTCTTTCCCCTGCCCGACCGAGGGAGCCAACGTTGCCTGCGC
TACAGCTTGCTTATTTTCGTCGCCTGTTCTCCTGATCCTGCGTGTTCTAAAAACCCCTTAGGCT
TTCCATGGGTTCCCAGACCATGGCGGTGGCGCTGCCCAGGGACTTGCGGCAGGACGCCAACCTG
GCAAAGAGGAGGCACGCGGAGCTGTGCAGGCAGAAGCGGGTCTTCAACGCCAGAAACAGGATAA
TTGGGGGAGACACTGAAGCCTGGGATGTTCAAGTTCATGACCAGAAGATAAAAGAAGCTACTGA
AAAAGCTAGACATGAAACCTTTGCTGCTGAAATGAGGCAAAATGACAAAATCGTGTGCATATTG
GAAAACCGGAAAAAGAGGGATAGGAAAAATCTCTGTAGGGCTATCAATGACTTCCAACAGAGCT
TTCAGAAGCCAGAAACTCGCCGTGAATTTGATCTGTCCGACCCCCTAGCCCTTAAGAAAGATCT
TCCAGCCCGGCAGTCAGATAATGATGTTCGGAATACGATATCAGGAATGCAGAAATTCATGGGA
GAGGATTTAAACTTCCATGAGAGGAAGAAATTCCAACAGGAACAAAACAGAGAATGGTCTTTGC
AGCAGCAAAGGGAATGGAAGAACGCCCGTGCTGAACAAAAATGCGCAGAGGCCCTCTACACAGA
GACAAGGCTGCAGTTTGACGAGACAGCCAAGCACCTCCAGAAGCTGGAAAGCACCACCAGAAAG
GCAGTTTGTGCATCTGTGAAAGACTTCAACAAGAGCCAGGCCATCGAGTCAGTGGAAAGGAAAA
AGCAAGAGAAAAAGCAAGAACAAGAGGACAACTTGGCCGAGATCACCAACCTCCTGCGTGGGGA
CCTGCTCTCCGAGAACCCGCAGCAGGCAGCCAGCTCCTTCGGGCCCCACCGCGTGGTCCCTGAC
CGCTGGAAGGGCATGACCCAGGAGCAGCTGGAGCAGATCCGCCTAGTCCAGAAGCAGCAAATCC
AGGAGAAGCTGAGGCTCCAGGAAGAAAAGCGCCAGCGAGATCTGGACTGGGACCGGCGGAGGAT
TCAGGGGGCTCGCGCCACCCTGCTGTTTGAGCGGCAGCAGCGGCGGCAGCAGCGCAACCTGCGC
AGAGCTCTGGACAGCAGCAACCTCAGCCTGGCCGAGGAGCAGCGTTTGCAGAAAAAATATATGA
ATGAAGTCTGTACAAATCAACCCACAGGAGACTATTTCACACAATTTAATACAGGAAGTCGATA
ATGAGGAACACACCCTTGTTCCCGTCATTCACGTATAAAGAGTGGCTACCTTAAAGAGTC

hide sequence

RefSeq Acc Id:

XM_034949132 ⟹ XP_034805023

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	23	55,239,242 - 55,288,350 (+)	NCBI
NHGRI_mPanPan1	22	57,934,687 - 57,987,033 (+)	NCBI
Mhudiblu_PPA_v0	22	26,299,646 - 26,335,700 (+)	NCBI

RefSeq Acc Id:

XM_063603150 ⟹ XP_063459220

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	23	55,235,551 - 55,288,350 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003812436	(Get FASTA)	NCBI Sequence Viewer
	XP_034805023	(Get FASTA)	NCBI Sequence Viewer
	XP_063459220	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000009664.1

RefSeq Acc Id:	XP_003812436 ⟸ XM_003812388
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9A302 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSQTMAVALPRDLRQDANLAKRRHAELCRQKRVFNARNRIIGGDTEAWDVQVHDQKIKEATEK ARHETFAAEMRQNDKIVCILENRKKRDRKNLCRAINDFQQSFQKPETRREFDLSDPLALKKDLP ARQSDNDVRNTISGMQKFMGEDLNFHERKKFQQEQNREWSLQQQREWKNARAEQKCAEALYTET RLQFDETAKHLQKLESTTRKAVCASVKDFNKSQAIESVERKKQEKKQEQEDNLAEITNLLRGDL LSENPQQAASSFGPHRVVPDRWKGMTQEQLEQIRLVQKQQIQEKLRLQEEKRQRDLDWDRRRIQ GARATLLFERQQRRQQRNLRRALDSSNLSLAEEQRLQKKYMNEVCTNQPTGDYFTQFNTGSR hide sequence

RefSeq Acc Id:	XP_034805023 ⟸ XM_034949132
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9A302 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSPPAP00000009664 ⟸ ENSPPAT00000032307

RefSeq Acc Id:	XP_063459220 ⟸ XM_063603150
- Peptide Label:	isoform X3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000028062	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000032307.1	UniProtKB/TrEMBL
InterPro	RIB43A	UniProtKB/TrEMBL
KEGG Report	pps:100978765	UniProtKB/TrEMBL
NCBI Gene	RIBC2	ENTREZGENE
PANTHER	PTHR14517	UniProtKB/TrEMBL
	RIB43A-LIKE WITH COILED-COILS PROTEIN 2	UniProtKB/TrEMBL
Pfam	RIB43A	UniProtKB/TrEMBL
UniProt	A0A2R9A302	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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