SSBP3 (single stranded DNA binding protein 3)

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Gene: SSBP3 (single stranded DNA binding protein 3) Pan paniscus

Analyze

Symbol:

SSBP3

Name:

single stranded DNA binding protein 3

RGD ID:

12004028

Description:

ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN head development (ortholog); head morphogenesis (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH Developmental Disease (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN protein-containing complex (ortholog); transcription regulator complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

single-stranded DNA-binding protein 3

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	1	171,570,724 - 171,749,558 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	53,501,656 - 53,680,682 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	55,094,800 - 55,281,039 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	55,094,820 - 55,272,207 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Developmental Disease (ISO)

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

head development (ISO)

head morphogenesis (ISO)

hematopoietic progenitor cell differentiation (ISO)

mesendoderm development (ISO)

midbrain-hindbrain boundary initiation (ISO)

positive regulation of anterior head development (ISO)

positive regulation of cell population proliferation (ISO)

positive regulation of DNA-templated transcription (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

prechordal plate formation (ISO)

protein-containing complex assembly (ISO)

Cellular Component

nucleus (IEA)

protein-containing complex (ISO)

transcription regulator complex (ISO)

Molecular Function

protein binding (ISO)

single-stranded DNA binding (IEA)

transcription coactivator activity (ISO)

References

Genomics

Comparative Map Data

SSBP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	1	171,570,724 - 171,749,558 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	53,501,656 - 53,680,682 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	55,094,800 - 55,281,039 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	55,094,820 - 55,272,207 (-)	Ensembl	panpan1.1		panPan2

SSBP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	54,225,432 - 54,413,490 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	1	54,225,432 - 54,413,479 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	54,691,105 - 54,879,163 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	54,464,783 - 54,644,680 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	54,404,615 - 54,583,917	NCBI
Celera	1	52,979,826 - 53,159,767 (-)	NCBI		Celera
Cytogenetic Map	1	p32.3	NCBI
HuRef	1	52,806,513 - 52,987,387 (-)	NCBI		HuRef
CHM1_1	1	54,807,651 - 54,988,420 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	54,108,317 - 54,296,354 (-)	NCBI		T2T-CHM13v2.0

Ssbp3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	106,768,667 - 106,906,891 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	106,767,898 - 106,906,891 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	106,911,470 - 107,049,694 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	106,910,701 - 107,049,694 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	106,584,075 - 106,722,299 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	106,409,402 - 106,547,626 (+)	NCBI		MGSCv36	mm8
Celera	4	105,272,425 - 105,410,615 (+)	NCBI		Celera
Cytogenetic Map	4	C7	NCBI

Ssbp3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	121,691,370 - 121,828,035 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	121,691,393 - 121,827,992 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	124,310,490 - 124,447,492 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	126,033,508 - 126,170,510 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	126,084,812 - 126,221,819 (+)	NCBI	Rnor_WKY
Rnor_6.0	5	126,511,339 - 126,649,830 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	126,511,350 - 126,648,661 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	130,364,154 - 130,500,627 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	127,987,980 - 128,127,771 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	127,993,205 - 128,132,997 (+)	NCBI
Celera	5	120,438,879 - 120,575,397 (+)	NCBI		Celera
Cytogenetic Map	5	q34	NCBI

Ssbp3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	4,901,151 - 5,047,656 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	4,901,150 - 5,049,341 (+)	NCBI	ChiLan1.0	ChiLan1.0

SSBP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	54,690,632 - 54,826,691 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	54,662,840 - 54,824,960 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	54,729,165 - 54,893,490 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	54,849,788 - 55,013,185 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	54,849,889 - 55,013,451 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	54,844,717 - 55,009,418 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	54,734,421 - 54,898,735 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	55,123,610 - 55,288,431 (+)	NCBI		UU_Cfam_GSD_1.0

Ssbp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	68,458,512 - 68,614,243 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936522	6,802,052 - 6,956,129 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936522	6,802,057 - 6,957,640 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SSBP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	157,911,493 - 158,081,476 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	157,911,583 - 158,081,478 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SSBP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	78,528,630 - 78,708,518 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	38,577,763 - 38,758,509 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ssbp3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624934	161,054 - 311,937 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624934	161,323 - 313,621 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_034965692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034965699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034965705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034965706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034965707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034965710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055092344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055092348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055092349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055092350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055092353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055092358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSPPAT00000059097 ⟹ ENSPPAP00000036206

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	55,094,820 - 55,149,243 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000059107 ⟹ ENSPPAP00000036215

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	55,096,427 - 55,272,207 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000059114 ⟹ ENSPPAP00000036222

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	55,096,427 - 55,272,207 (-)	Ensembl

RefSeq Acc Id:

XM_034965692 ⟹ XP_034821583

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1	1	171,570,724 - 171,749,558 (+)	NCBI
Mhudiblu_PPA_v0	1	53,501,656 - 53,680,375 (-)	NCBI

RefSeq Acc Id:

XM_034965699 ⟹ XP_034821590

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1	1	171,570,724 - 171,749,558 (+)	NCBI
Mhudiblu_PPA_v0	1	53,501,670 - 53,680,682 (-)	NCBI

RefSeq Acc Id:

XM_034965705 ⟹ XP_034821596

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1	1	171,570,724 - 171,749,558 (+)	NCBI
Mhudiblu_PPA_v0	1	53,501,656 - 53,680,375 (-)	NCBI

RefSeq Acc Id:

XM_034965706 ⟹ XP_034821597

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1	1	171,570,724 - 171,749,558 (+)	NCBI
Mhudiblu_PPA_v0	1	53,501,670 - 53,680,682 (-)	NCBI

RefSeq Acc Id:

XM_055092344 ⟹ XP_054948319

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1	1	171,650,500 - 171,749,558 (+)	NCBI

RefSeq Acc Id:

XM_055092348 ⟹ XP_054948323

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1	1	171,645,504 - 171,749,558 (+)	NCBI

RefSeq Acc Id:

XM_055092349 ⟹ XP_054948324

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1	1	171,617,911 - 171,749,558 (+)	NCBI

RefSeq Acc Id:

XM_055092350 ⟹ XP_054948325

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1	1	171,650,500 - 171,749,558 (+)	NCBI

RefSeq Acc Id:

XM_055092353 ⟹ XP_054948328

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1	1	171,645,501 - 171,749,558 (+)	NCBI

RefSeq Acc Id:

XM_055092358 ⟹ XP_054948333

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1	1	171,617,907 - 171,749,558 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_034821583	(Get FASTA)	NCBI Sequence Viewer
	XP_034821590	(Get FASTA)	NCBI Sequence Viewer
	XP_034821596	(Get FASTA)	NCBI Sequence Viewer
	XP_034821597	(Get FASTA)	NCBI Sequence Viewer
	XP_054948319	(Get FASTA)	NCBI Sequence Viewer
	XP_054948323	(Get FASTA)	NCBI Sequence Viewer
	XP_054948324	(Get FASTA)	NCBI Sequence Viewer
	XP_054948325	(Get FASTA)	NCBI Sequence Viewer
	XP_054948328	(Get FASTA)	NCBI Sequence Viewer
	XP_054948333	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_034821596 ⟸ XM_034965705
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_034821583 ⟸ XM_034965692
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_034821597 ⟸ XM_034965706
- Peptide Label:	isoform X4
- UniProtKB:	A0A2J8NI07 (UniProtKB/TrEMBL), A0A6D2WSJ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034821590 ⟸ XM_034965699
- Peptide Label:	isoform X2
- UniProtKB:	A0A6D2XHK2 (UniProtKB/TrEMBL), H2PZ33 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSPPAP00000036206 ⟸ ENSPPAT00000059097

RefSeq Acc Id:

ENSPPAP00000036215 ⟸ ENSPPAT00000059107

RefSeq Acc Id:

ENSPPAP00000036222 ⟸ ENSPPAT00000059114

RefSeq Acc Id:	XP_054948333 ⟸ XM_055092358
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_054948324 ⟸ XM_055092349
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_054948328 ⟸ XM_055092353
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_054948323 ⟸ XM_055092348
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_054948319 ⟸ XM_055092344
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_054948325 ⟸ XM_055092350
- Peptide Label:	isoform X7

Protein Domains

LisH

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000040857	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSPPAP00000036206.1	UniProtKB/TrEMBL
	ENSPPAP00000036215.1	UniProtKB/TrEMBL
	ENSPPAP00000036222.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000059097.1	UniProtKB/TrEMBL
	ENSPPAT00000059107.1	UniProtKB/TrEMBL
	ENSPPAT00000059114.1	UniProtKB/TrEMBL
InterPro	LisH	UniProtKB/TrEMBL
	SSDP_DNA-bd	UniProtKB/TrEMBL
NCBI Gene	SSBP3	ENTREZGENE
PANTHER	SINGLE STRANDED DNA BINDING PROTEIN	UniProtKB/TrEMBL
	SINGLE-STRANDED DNA-BINDING PROTEIN 3	UniProtKB/TrEMBL
Pfam	SSDP	UniProtKB/TrEMBL
PRINTS	SSDNABINDING	UniProtKB/TrEMBL
PROSITE	LISH	UniProtKB/TrEMBL
UniProt	A0A2J8NI07	ENTREZGENE
	A0A2R9C2P4_PANPA	UniProtKB/TrEMBL
	A0A2R9C2Q9_PANPA	UniProtKB/TrEMBL
	A0A2R9CD23_PANPA	UniProtKB/TrEMBL
	A0A6D2WSJ6	ENTREZGENE
	A0A6D2XHK2	ENTREZGENE
	H2PZ33	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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