LOC103783501 (zinc finger protein 611) - Rat Genome Database

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Gene: LOC103783501 (zinc finger protein 611) Pan paniscus
Analyze
Symbol: LOC103783501
Name: zinc finger protein 611
RGD ID: 12003425
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ZNF611
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22058,757,503 - 58,780,595 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11960,678,570 - 60,701,178 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01949,653,447 - 49,678,176 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11958,571,344 - 58,592,460 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC103783501
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22058,757,503 - 58,780,595 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11960,678,570 - 60,701,178 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01949,653,447 - 49,678,176 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11958,571,344 - 58,592,460 (-)NCBIpanpan1.1PanPan1.1panPan2
ZNF611
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381952,702,813 - 52,735,044 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1952,702,813 - 52,735,073 (-)EnsemblGRCh38hg38GRCh38
GRCh371953,206,066 - 53,238,297 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361957,899,284 - 57,924,947 (-)NCBINCBI36Build 36hg18NCBI36
Build 341957,899,283 - 57,924,947NCBI
Celera1950,255,299 - 50,287,709 (-)NCBICelera
Cytogenetic Map19q13.41NCBI
HuRef1949,534,528 - 49,566,679 (-)NCBIHuRef
CHM1_11953,207,840 - 53,240,085 (-)NCBICHM1_1
T2T-CHM13v2.01955,787,259 - 55,819,509 (-)NCBIT2T-CHM13v2.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034944523   ⟹   XP_034800414
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22058,757,503 - 58,780,595 (-)NCBI
NHGRI_mPanPan11960,678,570 - 60,701,178 (-)NCBI
Mhudiblu_PPA_v01949,653,447 - 49,678,176 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034800414 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000006785.1
  ENSPPAP00000006787.1
Reference Protein Sequences
RefSeq Acc Id: XP_034800414   ⟸   XM_034944523
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000025688 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000028477.1 UniProtKB/TrEMBL
  ENSPPAT00000028479.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC103783501 ENTREZGENE
PANTHER FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED UniProtKB/TrEMBL
  SI:DKEY-15H8.11 PROTEIN-RELATED UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R8ZPB7_PANPA UniProtKB/TrEMBL
  A0A2R8ZQI3_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC103783501  zinc finger protein 611  ZNF611  zinc finger protein 611  Symbol and/or name change 5135510 APPROVED
2023-05-02 ZNF611  zinc finger protein 611  LOC103783501  zinc finger protein 611  Symbol and/or name change 5135510 APPROVED